(
size_t i= 0;
i< m_Blocks.size();
i++) {
72m_Blocks[
i]->Print();
150 for(TConstScopedObjects::size_type
i= 0;
i<
objects.size(); ++
i) {
188 if(!found && !
objects.empty())
193 returntextGather->GetResults();
User-defined methods of the data storage class.
@ eAction_Skip
skip this block (i.e. don't print it)
void SetGenbankBlocks(const TGenbankBlocks &genbank_blocks)
void SetGenbankBlockCallback(CGenbankBlockCallback *pGenbankBlockCallback)
CFlatFileConfig & SetShowContigFeatures(bool val=true)
@ fGenbankBlocks_FeatAndGap
@ fGenbankBlocks_Sourcefeat
@ fGenbankBlocks_Keywords
@ fGenbankBlocks_Reference
@ fGenbankBlocks_Dbsource
@ fGenbankBlocks_Accession
@ fGenbankBlocks_Basecount
CFlatFileConfig & SetShowContigSources(bool val=true)
void Generate(const CSeq_entry_Handle &entry, CFlatItemOStream &item_os, const multiout &={})
CBioseqContext * GetContext(void)
static CRef< CSUCResults > GetSUCResults(TConstScopedObjects &objects)
void AddText(string &block_text, objects::CFlatFileConfig::FGenbankBlocks which_block, const string &accession, CConstRef< CObject > obj)
virtual EAction unified_notify(string &block_text, const CBioseqContext &ctx, const IFlatItem &flat_item, CFlatFileConfig::FGenbankBlocks which_block)
CRef< CSUCResults > m_Results
CRef< CSUCResults > GetResults()
virtual ~CSUCTextGather()
virtual EBioseqSkip notify_bioseq(CBioseqContext &ctx)
virtual const CSerialObject * GetObject(void) const =0
objects::CSeq_entry_Handle GetTopSeqEntryFromScopedObject(SConstScopedObject &obj)
vector< SConstScopedObject > TConstScopedObjects
CSeq_entry_Handle GetSeq_entryHandle(CDataLoader *loader, const TBlobId &blob_id, EMissing action=eMissing_Default)
Get Seq-entry handle by its blob-id, with possible loading.
CBioseq_Handle GetBioseqHandle(const CSeq_id &id)
Get bioseq handle by seq-id.
CBioseq_set_Handle GetBioseq_setHandle(const CBioseq_set &seqset, EMissing action=eMissing_Default)
CSeq_entry_Handle GetParentEntry(void) const
Get parent Seq-entry handle.
CSeq_entry_Handle GetParentEntry(void) const
Return a handle for the parent seq-entry of the bioseq.
CConstRef< C > ConstRef(const C *object)
Template function for conversion of const object pointer to CConstRef.
TObjectType * GetPointer(void) THROWS_NONE
Get pointer,.
#define END_NCBI_SCOPE
End previously defined NCBI scope.
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
IO_PREFIX::ostream CNcbiOstream
Portable alias for ostream.
@ e_Title
a title for this sequence
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