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NCBI C++ ToolKit: src/app/sub_fuse/subs_collector.cpp Source File

m_header_not_set(

),

.WriteFileHeader(seq_submit_type_info);

.BeginClass(seq_submit_class_type);

.EndClassMember();

.BeginClassMember(data_info->

());

.BeginChoice(data_choice_type);

.BeginChoiceVariant(data_choice_type, data_variant_info->

());

.BeginContainer(data_container_type);

.BeginChoice(entry_choice_type);

.BeginChoiceVariant(entry_choice_type, entry_variant_info->

());

.BeginClass(entry_class_type);

.WriteClassMember(set_class_info->

(), set_class_info->

(), &set_class);

.BeginClassMember(seqset_class_info->

());

.BeginContainer(seqset_container_type);

(entry.

()) {

(

annot : entry.

()) {

(annot->IsFtable()) {

(annot.

() &&

);

(

feat : annot.

().SetFtable()) {

= obj_id.

();

(

xref : feat.

()) {

(xref->IsSetId() && xref->GetId().IsLocal() && xref->GetId().GetLocal().IsId()) {

= obj_id.

();

.EndContainerElement();

process =

;

header = obj_in->ReadFileHeader();

(header !=

) {

((*entry)->GetSet().IsSetSeq_set()) {

.BasicCleanup(**internal_entry);

.BasicCleanup(**entry);

.EndClassMember();

.EndChoiceVariant();

.EndContainerElement();

.EndChoiceVariant();

.EndClassMember();

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

bool IsFtable(void) const

bool IsSetAnnot(void) const

namespace ncbi::objects::

CTypeInfo class contains all information about C++ types (both basic and classes): members and layout...

void AdjustLocalIds(CSeq_entry &entry)

bool CompleteProcessing()

bool ProcessFile(const string &path)

CSubmissionCollector(CNcbiOstream &out)

std::ofstream out("events_result.xml")

main entry point for tests

static void cleanup(void)

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

@ eNoOwnership

No ownership is assumed.

const CMemberId & GetId(void) const

TTypeInfo GetTypeInfo(void) const

virtual const CTypeInfo * GetThisTypeInfo(void) const =0

static const TObjectType * SafeCast(TTypeInfo type)

@ eSerial_AsnText

ASN.1 text.

pair< TObjectPtr, TTypeInfo > ObjectInfo(C &obj)

const CMemberInfo * GetMemberInfo(void) const

CMemberIterator FindMember(const string &memberName) const

Find class member by its name.

TTypeInfo GetTypeInfo(void) const

static CObjectIStream * Open(ESerialDataFormat format, CNcbiIstream &inStream, bool deleteInStream)

Create serial object reader and attach it to an input stream.

const CChoiceTypeInfo * GetChoiceTypeInfo(void) const

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

IO_PREFIX::ifstream CNcbiIfstream

Portable alias for ifstream.

TTypeInfo GetPointedType(void) const

const CMemberInfo * GetMemberInfo(TMemberIndex index) const

const CVariantInfo * GetVariantInfo(TMemberIndex index) const

bool IsId(void) const

Check if variant Id is selected.

TId & SetId(void)

Select the variant.

TId GetId(void) const

Get the variant data.

TXref & SetXref(void)

Assign a value to Xref data member.

const TId & GetId(void) const

Get the Id member data.

const TLocal & GetLocal(void) const

Get the variant data.

bool IsSetXref(void) const

cite other relevant features Check if a value has been assigned to Xref data member.

bool IsLocal(void) const

Check if variant Local is selected.

void SetId(TId &value)

Assign a value to Id data member.

bool IsSetId(void) const

Check if a value has been assigned to Id data member.

TSet & SetSet(void)

Select the variant.

bool IsSetSeq_set(void) const

Check if a value has been assigned to Seq_set data member.

bool IsSet(void) const

Check if variant Set is selected.

list< CRef< CSeq_entry > > TSeq_set

TSeq_set & SetSeq_set(void)

Assign a value to Seq_set data member.

@ eClass_genbank

converted genbank

void SetData(TData &value)

Assign a value to Data data member.

bool IsSetData(void) const

Check if a value has been assigned to Data data member.

list< CRef< CSeq_entry > > TEntrys

const TData & GetData(void) const

Get the Data member data.

void SetData(TData &value)

Assign a value to Data data member.

const TSub & GetSub(void) const

Get the Sub member data.

bool IsEntrys(void) const

Check if variant Entrys is selected.

static void StartWriting(CObjectOStream &out, const CSeq_submit &seq_submit)

static void WriteContainerElement(CObjectOStream &out, const CSeq_entry &entry)

std::istream & in(std::istream &in_, double &x_)

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