RetroSearch Browse

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/subprepmainpanel_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/subprepmainpanel.cpp Source File

99

wxPanel::Create( parent,

id

, pos,

size

, style );

104

GetSizer()->SetSizeHints(

this

);

191

wxBoxSizer* itemBoxSizer2 =

new

wxBoxSizer(wxVERTICAL);

192

itemPanel1->SetSizer(itemBoxSizer2);

194

wxFlexGridSizer* itemFlexGridSizer3 =

new

wxFlexGridSizer(0, 4, 0, 0);

195

itemBoxSizer2->Add(itemFlexGridSizer3, 0, wxALIGN_LEFT|wxALL, 5);

197

wxStaticText* itemStaticText4 =

new

wxStaticText( itemPanel1, wxID_STATIC,

(

"Sequencing Technology"

), wxDefaultPosition, wxSize(60, -1), 0 );

198

itemStaticText4->Wrap(20);

199

itemFlexGridSizer3->Add(itemStaticText4, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

201 m_StarTech

new

wxStaticText( itemPanel1, wxID_STATIC,

(

"*"

), wxDefaultPosition, wxDefaultSize, 0 );

202 m_StarTech

->SetForegroundColour(wxColour(255, 0, 0));

203 m_StarTech

->SetFont(wxFont(12, wxFONTFAMILY_SWISS, wxFONTSTYLE_NORMAL, wxFONTWEIGHT_NORMAL,

false

wxT

(

"Tahoma"

)));

204

itemFlexGridSizer3->Add(

m_StarTech

, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

209 m_SeqTechEdit

new

wxHyperlinkCtrl( itemPanel1,

ID_HYPERLINKCTRL1

(

"Edit"

), wxEmptyString, wxDefaultPosition, wxDefaultSize, wxHL_DEFAULT_STYLE );

210

itemFlexGridSizer3->Add(

m_SeqTechEdit

, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

212

wxStaticText* itemStaticText8 =

new

wxStaticText( itemPanel1, wxID_STATIC,

(

"Source Type"

), wxDefaultPosition, wxDefaultSize, 0 );

213

itemFlexGridSizer3->Add(itemStaticText8, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

215 m_StarSourceType

new

wxStaticText( itemPanel1, wxID_STATIC,

(

"*"

), wxDefaultPosition, wxDefaultSize, 0 );

217 m_StarSourceType

->SetFont(wxFont(12, wxFONTFAMILY_SWISS, wxFONTSTYLE_NORMAL, wxFONTWEIGHT_NORMAL,

false

wxT

(

"Tahoma"

)));

218

itemFlexGridSizer3->Add(

m_StarSourceType

, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

220

wxArrayString m_SourceTypeStrings;

223 m_SourceType

->SetToolTip(

(

"If you provide correct information about the type of organism the sample was isolated, this tool will suggest the required and recommended information needed to help the submission be processed more quickly by GenBank staff.\n"

));

224

itemFlexGridSizer3->Add(

m_SourceType

, 0, wxGROW|wxALIGN_CENTER_VERTICAL|wxALL, 5);

226

itemFlexGridSizer3->Add(5, 5, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

228

wxStaticText* itemStaticText12 =

new

wxStaticText( itemPanel1, wxID_STATIC,

(

"Source"

), wxDefaultPosition, wxDefaultSize, 0 );

229

itemFlexGridSizer3->Add(itemStaticText12, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

231 m_StarSource

new

wxStaticText( itemPanel1, wxID_STATIC,

(

"*"

), wxDefaultPosition, wxDefaultSize, 0 );

232 m_StarSource

->SetForegroundColour(wxColour(255, 0, 0));

233 m_StarSource

->SetFont(wxFont(12, wxFONTFAMILY_SWISS, wxFONTSTYLE_NORMAL, wxFONTWEIGHT_NORMAL,

false

wxT

(

"Tahoma"

)));

234

itemFlexGridSizer3->Add(

m_StarSource

, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

236 m_SourceLabel

new

wxTextCtrl( itemPanel1,

ID_TEXTCTRL2

, wxEmptyString, wxDefaultPosition, wxSize(-1, 50), wxTE_MULTILINE|wxTE_READONLY );

237

itemFlexGridSizer3->Add(

m_SourceLabel

, 0, wxGROW|wxALIGN_CENTER_VERTICAL|wxALL, 5);

240

itemFlexGridSizer3->Add(

m_EditSourceLink

, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

242

wxStaticText* itemStaticText16 =

new

wxStaticText( itemPanel1, wxID_STATIC,

(

"Features"

), wxDefaultPosition, wxDefaultSize, 0 );

243

itemFlexGridSizer3->Add(itemStaticText16, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

245 m_StarFeatures

new

wxStaticText( itemPanel1, wxID_STATIC,

(

"*"

), wxDefaultPosition, wxDefaultSize, 0 );

247 m_StarFeatures

->SetFont(wxFont(12, wxFONTFAMILY_SWISS, wxFONTSTYLE_NORMAL, wxFONTWEIGHT_NORMAL,

false

wxT

(

"Tahoma"

)));

248

itemFlexGridSizer3->Add(

m_StarFeatures

, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

250 m_FeaturesLabel

new

wxTextCtrl( itemPanel1,

ID_TEXTCTRL1

, wxEmptyString, wxDefaultPosition, wxDefaultSize, wxTE_MULTILINE|wxTE_READONLY );

251

itemFlexGridSizer3->Add(

m_FeaturesLabel

, 0, wxGROW|wxALIGN_CENTER_VERTICAL|wxALL, 5);

253

wxBoxSizer* itemBoxSizer19 =

new

wxBoxSizer(wxVERTICAL);

254

itemFlexGridSizer3->Add(itemBoxSizer19, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

257

itemBoxSizer19->Add(

m_FeatureAddBtn

, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

262 m_RemoveFeaturesBtn

new

wxHyperlinkCtrl( itemPanel1,

ID_REMOVE_FEAT

(

"Remove All Features"

), wxEmptyString, wxDefaultPosition, wxDefaultSize, wxHL_DEFAULT_STYLE );

323

wxWindow* w = this->GetParent();

339

star->SetLabel(

wxT

(

"*"

));

341

star->SetLabel(

wxT

(

" "

));

355 bool

ok_to_bulk_edit =

true

;

356 string

message =

""

;

358 bool

missing_required =

false

;

364 string

missing =

""

;

365 string

all_summary =

""

;

366 bool

any_data =

false

;

367 bool

missing_required_col =

false

;

368 for

(

size_t i

= 1;

table

->GetColumns().

size

();

++) {

369 string

title =

table

->GetColumns()[

]->GetHeader().GetTitle();

371 string

first_val =

table

->GetColumns()[

]->GetData().GetString()[0];

375

all_summary +=

"\n"

;

377

all_summary += title +

":"

+ first_val;

381

ok_to_bulk_edit =

false

;

383

mixed =

"Record contains mixed values for "

;

390 if

(

NStr::Equal

(title,

"Sequencing Technology"

)) {

391

missing +=

"Missing required Sequencing Technology information. "

;

392

missing_required_col =

true

;

399 if

((required || any_data) && missing_required_col) {

400

missing_required =

true

;

403

message = missing + mixed;

404

}

else if

(required) {

405

message =

"Missing required sequencing technology information"

;

406

missing_required =

true

;

409

message = all_summary;

413

message =

"Missing required sequencing technology information"

;

414

missing_required =

true

;

421 if

(missing_required) {

424 if

(ok_to_bulk_edit) {

472

wxHyperlinkCtrl* link_ctrl =

dynamic_cast<

wxHyperlinkCtrl*

>

(

event

.GetEventObject());

486 switch

(wizard_type) {

488 m_SourceType

->Append (

wxT

(

"Norovirus, Sapovirus (Caliciviridae)"

));

492 m_SourceType

->Append (

wxT

(

"Not listed above or mixed set of different viruses"

));

536 bool

is_unchosen =

false

;

554 if

(choices.size() > 0 && choices.Last() == wxEmptyString) {

559 if

(kit->first == src_type) {

560

wxArrayString::iterator it = choices.begin();

566 if

(it != choices.end()) {

568

is_unchosen =

false

;

577 if

(is_unchosen && choices.size() > 1) {

579 m_SourceType

->SetSelection(

static_cast<int>

(choices.size()));

605 switch

(wizard_type) {

687

src_type = kit->first;

733 for

(

int

pos =

static_cast<int>

(

m_FieldsInUse

.size()) - 1; pos > -1; pos--) {

747 for

(

int

pos = 0; pos < num_keep; pos++) {

750

vector<CSubPrepFieldEditor * >::iterator it =

m_ExtraFields

.begin();

752 if

((*it) ==

NULL

) {

764 string label

string

column_name,

766 bool

must_choose,

bool

required,

767 string

default_val,

string

url,

774 if

(

NStr::Equal

((*it)->GetColumnName(), column_name)) {

781 if

(new_field ==

NULL

) {

783 m_WizardExtras

->Add(new_field, 0, wxGROW|wxALIGN_CENTER_VERTICAL|wxALL, 0);

790

new_field->

SetConverter

(

label

, column_name, converter, must_choose, required, default_val, url, allow_mix);

873

wxStaticText* star =

new

wxStaticText(

this

, wxID_STATIC,

(

"*"

), wxDefaultPosition, wxDefaultSize, 0 );

874

star->SetForegroundColour(wxColour(255, 0, 0));

875

sizer->Add(star, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

876

star->SetFont(wxFont(12, wxFONTFAMILY_SWISS, wxFONTSTYLE_NORMAL, wxFONTWEIGHT_NORMAL,

false

wxT

(

"Tahoma"

)));

895 if

(!seh || !seh.IsSet()) {

899 int

set_class = objects::CBioseq_set::eClass_not_set;

900 if

(seh.GetSet().IsSetClass()) {

901

set_class = seh.GetSet().GetClass();

904

wxArrayString set_strings;

905

wxString tooltip_text = wxEmptyString;

907

wxString sel = wxEmptyString;

909 case

objects::CBioseq_set::eClass_pop_set:

910

sel =

"Population Study"

;

912 case

objects::CBioseq_set::eClass_phy_set:

913

sel =

"Phylogenetic Study"

;

915 case

objects::CBioseq_set::eClass_mut_set:

916

sel =

"Mutation Study"

;

918 case

objects::CBioseq_set::eClass_eco_set:

919

sel =

"Environmental set"

;

921 case

objects::CBioseq_set::eClass_genbank:

929 switch

(wizard_type) {

931

tooltip_text.append(

wxT

(

"Batch: Do not process as a set.\n"

));

932

tooltip_text.append(

wxT

(

"Population Study: a set of sequences that were derived by sequencing the same gene from different isolates of the same organism.\n"

));

933

tooltip_text.append(

wxT

(

"Phylogenetic Study: a set of sequences that were derived by sequencing the same gene from different organisms.\n"

));

934

tooltip_text.append(

wxT

(

"Mutation Study: a set of sequences that were derived by sequencing multiple mutations of a single gene.\n"

));

935

tooltip_text.append(

wxT

(

"Environmental set: a set of sequences that were derived by sequencing the same gene from a population of unclassified or unknown organisms."

));

937

set_strings.push_back(

wxT

(

"Batch"

));

938

set_strings.push_back(

wxT

(

"Population Study"

));

939

set_strings.push_back(

wxT

(

"Phylogenetic Study"

));

940

set_strings.push_back(

wxT

(

"Mutation Study"

));

941

set_strings.push_back(

wxT

(

"Environmental set"

));

944

tooltip_text.append(

wxT

(

"Batch: Do not process as a set.\n"

));

945

tooltip_text.append(

wxT

(

"Environmental set: a set of sequences that were derived by sequencing the same gene from a population of unclassified or unknown organisms."

));

946

set_strings.push_back(

wxT

(

"Batch"

));

947

set_strings.push_back(

wxT

(

"Environmental set"

));

953

tooltip_text.append(

wxT

(

"Batch: Do not process as a set.\n"

));

954

tooltip_text.append(

wxT

(

"Population Study: a set of sequences that were derived by sequencing the same gene from different isolates of the same organism.\n"

));

955

tooltip_text.append(

wxT

(

"Phylogenetic Study: a set of sequences that were derived by sequencing the same gene from different organisms.\n"

));

956

tooltip_text.append(

wxT

(

"Mutation Study: a set of sequences that were derived by sequencing multiple mutations of a single gene.\n"

));

957

tooltip_text.append(

wxT

(

"Environmental set: a set of sequences that were derived by sequencing the same gene from a population of unclassified or unknown organisms."

));

959

set_strings.push_back(

wxT

(

"Batch"

));

960

set_strings.push_back(

wxT

(

"Population Study"

));

961

set_strings.push_back(

wxT

(

"Phylogenetic Study"

));

962

set_strings.push_back(

wxT

(

"Mutation Study"

));

963

set_strings.push_back(

wxT

(

"Environmental set"

));

966 if

(set_class == objects::CBioseq_set::eClass_genbank) {

969

set_strings.push_back(

wxT

(

"Batch"

));

973 if

(set_strings.empty()) {

977

wxStaticText* itemStaticText =

new

wxStaticText(

this

, wxID_STATIC,

wxT

(

"Set Type"

978

wxDefaultPosition, wxSize(60, -1), wxALIGN_CENTRE );

979 m_ExtraGrid

->Add(itemStaticText, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

983

wxChoice *choice =

new

wxChoice(

this

ID_SET_CHOICE

, wxDefaultPosition, wxSize(400, -1), set_strings, 0 );

984 m_ExtraGrid

->Add(choice, 0, wxGROW|wxALIGN_CENTER_VERTICAL|wxALL, 5);

985

wxString please_choose =

wxT

(

"Please choose a set type"

);

986 if

(sel.empty() || !choice->SetStringSelection(sel)) {

987

choice->AppendString(please_choose);

988

choice->SetStringSelection(please_choose);

996

choice->SetToolTip(tooltip_text);

999 m_ExtraGrid

->Add(5, 5, 0, wxALIGN_CENTER_HORIZONTAL|wxALIGN_CENTER_VERTICAL|wxALL, 5);

@ eWizardSrcType_cultured_fungus

@ eWizardSrcType_virus_norovirus

@ eWizardSrcType_virus_foot_and_mouth

@ eWizardSrcType_bacteria_or_archaea

@ eWizardSrcType_uncultured_fungus

@ eWizardSrcType_virus_influenza

@ eWizardSrcType_vouchered_fungus

@ eWizardSrcType_virus_rotavirus

@ eWizardType_uncultured_samples

@ eWizardType_microsatellite

@ eWizardType_rrna_its_igs

void SetConverter(string label, string column_name, CTableFieldCommandConverter *converter, bool must_choose=false, bool required=false, string default_val="", string url="", bool allow_mix=true)

void ImportFeatureTableFile()

void SetSubmissionNotReady(string error)

bool OkToBulkEditSeqTech()

bool IsSequencingTechnologyRequired(CSourceRequirements::EWizardType wizard_type)

string GetWizardSrcTypeField()

void LaunchFeatureAdder()

void LaunchSourceEditor()

CRef< objects::CSeq_table > GetSeqTechTable()

void LaunchSeqTechEditor()

void ClearSeqTechValues()

void SetSourceType(string src_type)

CSourceRequirements::EWizardType GetWizardType()

CVirusMoleculeQuestionsPanel * m_VirusMolQuestions

static bool ShowToolTips()

Should we show tooltips?

wxHyperlinkCtrl * m_SeqTechEdit

void OnClickSeqTechSummary(wxMouseEvent &event)

wxEVT_LEFT_DOWN event handler for ID_TEXTCTRL

wxHyperlinkCtrl * m_FeatureImportBtn

wxBitmap GetBitmapResource(const wxString &name)

Retrieves bitmap resources.

void OnAddFeaturesClicked(wxHyperlinkEvent &event)

wxEVT_COMMAND_HYPERLINK event handler for ID_HYPERLINKCTRL3

void AddField(objects::CSeq_entry_Handle seh, ICommandProccessor *processor, IWorkbench *workbench, string label, string column_name, CTableFieldCommandConverter *converter, bool must_choose=false, bool required=false, string default_val="", string url="", bool allow_mix=true)

void OnEditSourceClicked(wxHyperlinkEvent &event)

wxEVT_COMMAND_HYPERLINK event handler for ID_HYPERLINKCTRL2

void ShowSourceLabelStar(bool val)

wxStaticText * m_StarTech

wxHyperlinkCtrl * m_EditSourceLink

CSubmissionPrepMainPanel()

Constructors.

~CSubmissionPrepMainPanel()

Destructor.

wxBoxSizer * m_WizardExtras

CSourceRequirements::EWizardSrcType GetWizardSrcTypeFromCtrls(CSourceRequirements::EWizardType wizard_type)

void Init()

Initialises member variables.

void ShowAddFeatureBtn(bool val)

wxStaticText * m_StarFeatures

void OnSourceTypeSelected(wxCommandEvent &event)

wxEVT_COMMAND_CHOICE_SELECTED event handler for ID_SOURCETYPE

wxStaticText * m_StarSource

wxTextCtrl * m_SequencingTechLabel

void SetSourceType(CSourceRequirements::EWizardSrcType src_type)

wxHyperlinkCtrl * m_RemoveFeaturesBtn

void OnRemoveFeatHyperlinkClicked(wxHyperlinkEvent &event)

wxEVT_COMMAND_HYPERLINK event handler for ID_REMOVE_FEAT

void SetFeaturesLabel(string label)

void SetSourceTypeOptions(CSourceRequirements::EWizardType wizard_type)

pair< CSourceRequirements::EWizardSrcType, string > TWizardSrcTypeName

CSourceRequirements::EWizardSrcType GetWizardSrcTypeFromName(string name)

CSubPrep_panel * x_GetParent()

wxTextCtrl * m_FeaturesLabel

vector< CSubPrepFieldEditor * > m_ExtraFields

void OnClickFeatureSummary(wxMouseEvent &event)

wxEVT_LEFT_DOWN event handler for ID_TEXTCTRL1

void OnImportFeatureTableFile(wxHyperlinkEvent &event)

wxEVT_COMMAND_HYPERLINK event handler for ID_HYPERLINKCTRL4

vector< bool > m_FieldsInUse

void OnEditSequencingTechnologyClicked(wxHyperlinkEvent &event)

wxEVT_COMMAND_HYPERLINK event handler for ID_HYPERLINKCTRL1

TWizardSrcTypeNameList m_SrcTypeNames

void CreateSetChoice(CSourceRequirements::EWizardType wizard_type, objects::CSeq_entry_Handle seh)

vector< TWizardSrcTypeName > TWizardSrcTypeNameList

void UpdateSeqTechCtrls(CSourceRequirements::EWizardType wizard_type)

bool Create(wxWindow *parent, wxWindowID id=10001, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL)

Creation.

wxBoxSizer * m_VirusMolSizer

wxFlexGridSizer * m_ExtraGrid

void SetSourceLabel(string label)

void CreateVirusMoleculeOptions(objects::CSeq_entry_Handle seh, ICommandProccessor *processor)

void OnClickSrcSummary(wxMouseEvent &event)

wxEVT_LEFT_DOWN event handler for ID_TEXTCTRL2

wxStaticText * x_AddStar(wxFlexGridSizer *sizer)

wxStaticText * m_StarSourceType

wxBoxSizer * m_ChimeraSizer

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

wxHyperlinkCtrl * m_FeatureAddBtn

wxTextCtrl * m_SourceLabel

void CreateControls()

Creates the controls and sizers.

void ShowFeaturesStar(bool val)

CChimeraPanel * m_ChimeraPanel

void ShowChimera(objects::CSeq_entry_Handle seh, ICommandProccessor *processor, IWorkbench *workbench, bool show)

Undo/Redo interface for editing operations.

IWorkbench is the central interface in the application framework.

const char * kMoleculeType

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool IsBlank(const CTempString str, SIZE_TYPE pos=0)

Check if a string is blank (has no text).

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static bool Equal(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2, ECase use_case=eCase)

Test for equality of a substring with another string.

static const char label[]

<!DOCTYPE HTML >< html > n< header > n< title > PubSeq Gateway Help Page</title > n< style > n table

CRef< objects::CSeq_table > BuildMolInfoValuesTableFromSeqEntry(objects::CSeq_entry_Handle seh, CSourceRequirements::EWizardType wizard_type)

const struct ncbi::grid::netcache::search::fields::SIZE size

CRef< CSeqTable_column > FindSeqTableColumnByName(CRef< objects::CSeq_table > values_table, string column_name)

bool AreAnyColumnValuesMissing(CRef< objects::CSeqTable_column > col)

bool AreAllColumnValuesTheSame(CRef< objects::CSeqTable_column > col, string default_val="")

bool DoesColumnHaveValue(CRef< objects::CSeqTable_column > col, string val)

static int num_srctype_names

static CSubmissionPrepMainPanel::TWizardSrcTypeName s_srctype_names[]

static void s_ShowStar(wxStaticText *star, bool show)

#define ID_HYPERLINKCTRL1

#define ID_HYPERLINKCTRL3

#define ID_HYPERLINKCTRL2

#define ID_HYPERLINKCTRL4

wxString ToWxString(const string &s)

string ToStdString(const wxString &s)

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4