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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/su__sequence__set_8hpp_source.html below:

NCBI C++ ToolKit: include/algo/structure/struct_util/su_sequence_set.hpp Source File

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34 #ifndef SU_SEQUENCE_SET__HPP 35 #define SU_SEQUENCE_SET__HPP 54  Sequence

(ncbi::objects::CBioseq& bioseq);

61  unsigned int Length

(

void

)

const

{

return

m_sequenceString.size(); }

64  const

ncbi::objects::CSeq_id& GetPreferredIdentifier(

void

)

const

;

65  const

ncbi::objects::CBioseq::TId&

GetAllIdentifiers

(

void

)

const

{

return

m_bioseqASN->GetId(); }

66  bool

MatchesSeqId(

const

ncbi::objects::CSeq_id& seqID)

const

;

73  typedef

std::list < ncbi::CRef < ncbi::objects::CSeq_entry > >

SeqEntryList

;

std::list< ncbi::CRef< ncbi::objects::CSeq_entry > > SeqEntryList

std::list< ncbi::CRef< Sequence > > SequenceList

std::string m_sequenceString

unsigned int Length(void) const

const ncbi::objects::CBioseq::TId & GetAllIdentifiers(void) const

ncbi::CRef< ncbi::objects::CBioseq > m_bioseqASN

Include a standard set of the NCBI C++ Toolkit most basic headers.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_STRUCTUTIL_EXPORT

Magic spell ;-) needed for some weird compilers... very empiric.

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

The NCBI C++/STL use hints.


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