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NCBI C++ ToolKit: SWGSCreateInfo Struct Reference

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enum   EFlags {
  fIds_gi = 1<<0 , fIds_acc = 1<<1 , fIds_gnl = 1<<2 , fMaskIds = fIds_gi|fIds_acc|fIds_gnl ,
  fDefaultIds = fIds_gi|fIds_acc|fIds_gnl , fInst_ncbi4na = 0<<3 , fInst_delta = 1<<3 , fMaskInst = fInst_ncbi4na|fInst_delta ,
  fDefaultInst = fInst_delta , fSeqDescr = 1<<4 , fNucProtDescr = 1<<12 , fMasterDescr = 1<<5 ,
  fMasterDescrMark = 1<<13 , fSeqDescrObj = 1<<14 , fMaskDescr = fSeqDescr|fNucProtDescr|fMasterDescr , fDefaultDescr = fSeqDescr|fNucProtDescr|fMasterDescr ,
  fSeqAnnot = 1<<6 , fQualityGraph = 1<<7 , fMaskAnnot = fSeqAnnot|fQualityGraph , fDefaultAnnot = fSeqAnnot|fQualityGraph ,
  fSplitQualityGraph = 1<<8 , fSplitSeqData = 1<<9 , fSplitProducts = 1<<10 , fSplitFeatures = 1<<11 ,
  fSplitAll = fSplitQualityGraph | fSplitSeqData | fSplitProducts | fSplitFeatures , fSplitMask = fSplitQualityGraph | fSplitSeqData | fSplitProducts | fSplitFeatures , fDefaultSplit = fSplitAll , fDefaultFlags = fDefaultIds|fDefaultDescr|fDefaultAnnot|fDefaultInst|fDefaultSplit
}   enum   EFeatLocIdType : Int1 { eFeatLocIdUninitialized = -1 , eFeatLocIdGi = 0 , eFeatLocIdAccVer , eFeatLocIdAccNoVer }   enum   EGBStateType { eGBStateZero = 0 , eGBStateRaw = 1 , eGBStateProject = 2 , eGBStateAll = 3 }   typedef int  TSplitVersion   typedef int  TChunkId   static const TSplitVersion  kDefaultSplitVersion = 0  

Definition at line 3805 of file wgsread.cpp.

◆ SWGSCreateInfo() [1/3] ◆ SWGSCreateInfo() [2/3] ◆ SWGSCreateInfo() [3/3] ◆ x_AddDescr() ◆ x_AddFeature() ◆ x_AddFeatures() [1/2] ◆ x_AddFeatures() [2/2] ◆ x_AddFeaturesDirect() ◆ x_AddFeaturesSplit() ◆ x_AddProducts() void SWGSCreateInfo::x_AddProducts ( const vector< TVDBRowId > &  product_row_ids )

Definition at line 5929 of file wgsread.cpp.

References entries, ERR_POST_X, SWGSDb_Defs::fDefaultFlags, SWGSFeatChunkInfo::feat_id, flags, SWGSDb_Defs::fMasterDescr, ITERATE, kMainEntryId, SWGSFeatChunkInfo::main_id, CWGSProteinIterator::SelectRow(), CSeq_entry_Base::SetSeq(), CBioseq_set_Base::SetSeq_set(), CSeq_entry_Base::SetSet(), and CWGSProteinIterator::x_CreateBioseq().

◆ x_CreateProtSet()

Definition at line 5976 of file wgsread.cpp.

References _ASSERT, eChunk_prod, ERR_POST_X, flags, CWGSProteinIterator::GetIds(), ITERATE, kChunkIdStep, kMainEntryId, kProdPerChunk, PROFILE, CWGSProteinIterator::SelectRow(), split(), and sx_AddSplitIds().

◆ x_GetProtSet()

Definition at line 5491 of file wgsread.cpp.

References CBioseq_set_Base::eClass_nuc_prot, entry, CSeq_entry_Base::IsSet(), kMainEntryId, main_seq, CBioseq_set_Base::SetClass(), CBioseq_set_Base::SetId(), CSeq_entry_Base::SetSeq(), CBioseq_set_Base::SetSeq_set(), CSeq_entry_Base::SetSet(), split_feat, and split_prod.

Referenced by x_AddFeaturesDirect().

◆ x_ResetId() void SWGSCreateInfo::x_ResetId ( ) inline

Definition at line 3867 of file wgsread.cpp.

◆ x_ResetSeq() void SWGSCreateInfo::x_ResetSeq ( ) inline

Definition at line 3883 of file wgsread.cpp.

◆ x_SetFlags() void SWGSCreateInfo::x_SetFlags ( TFlags  flags ) ◆ x_SetId()

template<class Iter >

void SWGSCreateInfo::x_SetId ( Iter &  it ) inline ◆ x_SetSeq() [1/2] ◆ x_SetSeq() [2/2]

template<class Iter >

void SWGSCreateInfo::x_SetSeq ( Iter &  it ) inline

Definition at line 3873 of file wgsread.cpp.

◆ x_SetSplitVersion() void SWGSCreateInfo::x_SetSplitVersion ( TSplitVersion  split_version ) ◆ chunk ◆ data ◆ db ◆ entry ◆ feat_id ◆ flags TFlags SWGSCreateInfo::flags ◆ main_id ◆ main_seq ◆ split ◆ split_data ◆ split_feat bool SWGSCreateInfo::split_feat ◆ split_prod bool SWGSCreateInfo::split_prod ◆ split_qual ◆ split_version

The documentation for this struct was generated from the following file:

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