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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/structSVBDSRC__SeqSrc__Data.html below:

NCBI C++ ToolKit: SVBDSRC_SeqSrc_Data Struct Reference

Search Toolkit Book for SVBDSRC_SeqSrc_Data

Structure providing top-level VDB data access. More...

#include "vdb_priv.h"
(Private to src/algo/blast/vdb.)

Collaboration diagram for SVBDSRC_SeqSrc_Data:

Detailed Description

Structure providing top-level VDB data access.

This structure stores a handle to the VDB manager used for opening runs in the database. It is used as a top-level data access object by this library.

Definition at line 77 of file vdb_priv.h.

Member Data Documentation ◆ hdlMgr VdbBlastMgr* SVBDSRC_SeqSrc_Data::hdlMgr ◆ isInitialized Boolean SVBDSRC_SeqSrc_Data::isInitialized

Is the object initialized.

Definition at line 100 of file vdb_priv.h.

Referenced by s_VDBSRC_GetAvgLength(), s_VDBSRC_GetMaxLength(), s_VDBSRC_GetName(), s_VDBSRC_GetNumSeqs(), s_VDBSRC_GetTotLen(), s_VDBSRC_IteratorNext(), s_VDBSRC_SrcNew(), VDBSRC_CopyData(), VDBSRC_GetAvgSeqLen(), VDBSRC_GetIsProtein(), VDBSRC_GetMaxSeqLen(), VDBSRC_GetOIDFromReadName(), VDBSRC_GetSeqLen(), VDBSRC_GetTotSeqLen(), VDBSRC_InitCSRAData(), VDBSRC_InitData(), VDBSRC_MakeCSRASeqSrcFromSRASeqSrc(), and VDBSRC_NewData().

◆ names char* SVBDSRC_SeqSrc_Data::names ◆ numRuns ◆ numSeqs ◆ range_list ◆ reader_2na ◆ reader_4na VdbBlast4naReader* SVBDSRC_SeqSrc_Data::reader_4na ◆ refSet VdbBlastReferenceSet* SVBDSRC_SeqSrc_Data::refSet

Definition at line 88 of file vdb_priv.h.

Referenced by s_GetSeq4naChunkSeq(), s_GetSeq4naChunkSeq_PartialFetching(), s_VDBSRC_GetSupportsPartialFetching(), VDBSRC_CopyData(), VDBSRC_FreeData(), VDBSRC_GetAvgSeqLen(), VDBSRC_GetMaxSeqLen(), VDBSRC_GetOIDFromReadName(), VDBSRC_GetReadNameForOID(), VDBSRC_GetSeq4naCopy(), VDBSRC_GetSeqLen(), VDBSRC_GetTotSeqLen(), VDBSRC_Init2naReader(), VDBSRC_Init4naReader(), VDBSRC_Load2naSeqToBuffer(), VDBSRC_MakeCSRASeqSrcFromSRASeqSrc(), and VDBSRC_NewData().

◆ runSet VdbBlastRunSet* SVBDSRC_SeqSrc_Data::runSet

Definition at line 87 of file vdb_priv.h.

Referenced by VDBSRC_CopyData(), VDBSRC_FreeData(), VDBSRC_GetAvgSeqLen(), VDBSRC_GetIsProtein(), VDBSRC_GetMaxSeqLen(), VDBSRC_GetOIDFromReadName(), VDBSRC_GetReadNameForOID(), VDBSRC_GetSeqLen(), VDBSRC_GetTotSeqLen(), VDBSRC_Init2naReader(), VDBSRC_Init4naReader(), VDBSRC_InitData(), VDBSRC_MakeCSRASeqSrcFromSRASeqSrc(), and VDBSRC_NewData().

The documentation for this struct was generated from the following file:

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