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NCBI C++ ToolKit: SPsiBlastScoreMatrix Struct Reference

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Scoring matrix data used in PSI-BLAST. More...

#include <algo/blast/core/blast_stat.h>

Collaboration diagram for SPsiBlastScoreMatrix:

Detailed Description

Scoring matrix data used in PSI-BLAST.

Definition at line 149 of file blast_stat.h.

Member Data Documentation ◆ freq_ratios double** SPsiBlastScoreMatrix::freq_ratios ◆ kbp ◆ pssm

position-specific score matrix

Definition at line 150 of file blast_stat.h.

Referenced by ALIGN_EX(), BLAST_GetGappedScore(), Blast_RedoAlignmentCore_MT(), Blast_SemiGappedAlign(), BLAST_SmithWatermanGetGappedScore(), BlastGetOffsetsForGappedAlignment(), BlastGetStartForGappedAlignment(), LookupTableWrapInit_MT(), RPSPsiMatrixAttach(), RPSPsiMatrixDetach(), RPSRescalePssm(), s_BlastScoreBlk_Copy(), s_BlastSearchEngineOneContext(), s_GetTraceback(), s_OutOfFrameAlignWithTraceback(), s_OutOfFrameGappedAlign(), s_RecordInitialSearch(), s_RestoreSearch(), s_RestrictedGappedAlign(), s_RPSComputeTraceback(), s_RPSFillFreqRatiosInPsiMatrix(), s_SmithWatermanScoreOnly(), CRedoAlignmentTestFixture::setupPositionBasedBlastScoreBlk(), SmithWatermanScoreWithTraceback(), SPsiBlastScoreMatrixFree(), and SPsiBlastScoreMatrixNew().

The documentation for this struct was generated from the following file:

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