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NCBI C++ ToolKit: SAlignment_Segment Struct Reference

Search Toolkit Book for SAlignment_Segment

Structure to hold information about a single alignment segment. More...

#include <objects/seq/seq_align_mapper_base.hpp>

  SAlignment_Segment (int len, size_t dim)   Create a new segment with the given length and number of rows. More...
  SAlignment_Row &  GetRow (size_t idx)   Get row data with the given index. More...
  SAlignment_Row &  CopyRow (size_t idx, const SAlignment_Row &src_row)   Create a copy of the given row, store is to this segment as row number 'idx'. More...
  SAlignment_Row &  AddRow (size_t idx, const CSeq_id &id, int start, bool is_set_strand, ENa_strand strand)   Add new row. More...
  SAlignment_Row &  AddRow (size_t idx, const CSeq_id_Handle &id, int start, bool is_set_strand, ENa_strand strand)   Add new row. More...
 

Structure to hold information about a single alignment segment.

Used internally by CSeq_align_Mapper_Base.

Definition at line 57 of file seq_align_mapper_base.hpp.

◆ TPartType ◆ TRows ◆ TScores ◆ SAlignment_Segment() SAlignment_Segment::SAlignment_Segment ( int  len, size_t  dim  ) ◆ AddRow() [1/2] ◆ AddRow() [2/2] ◆ CopyRow() ◆ GetRow() ◆ m_GroupIdx int SAlignment_Segment::m_GroupIdx ◆ m_HaveStrands bool SAlignment_Segment::m_HaveStrands ◆ m_Len int SAlignment_Segment::m_Len ◆ m_PartType ◆ m_Rows TRows SAlignment_Segment::m_Rows ◆ m_Scores TScores SAlignment_Segment::m_Scores ◆ m_ScoresGroupIdx ssize_t SAlignment_Segment::m_ScoresGroupIdx

The documentation for this struct was generated from the following files:

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