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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/structPSIMsaCell.html below:

NCBI C++ ToolKit: PSIMsaCell Struct Reference

Search Toolkit Book for PSIMsaCell

Structure to describe the characteristics of a position in the multiple sequence alignment data structure. More...

#include <algo/blast/core/blast_psi.h>

Detailed Description

Structure to describe the characteristics of a position in the multiple sequence alignment data structure.

Definition at line 49 of file blast_psi.h.

Member Data Documentation ◆ is_aligned

Is this letter part of the alignment?

Definition at line 52 of file blast_psi.h.

Referenced by BOOST_AUTO_TEST_CASE(), CdPssmInput::copyRow(), CdPssmInput::countResiduesInRow(), FillInAlignmentData(), PssmMaker::getPssmColumnResidues(), PssmMaker::printAlignmentByColumn(), printMsa(), CdPssmInput::Process(), PSIMsaNew(), CdPssmInput::read(), SU_PSSMInput::SU_PSSMInput(), CdPssmInput::unalignLeadingTrailingGaps(), CPsiBlastInputClustalW::x_CopyQueryToMsa(), CPsiBlastInputData::x_CopyQueryToMsa(), CPsiBlastInputClustalW::x_ExtractAlignmentData(), and CPsiBlastInputData::x_ProcessDenseg().

◆ letter

Preferred letter at this position, in ncbistdaa encoding.

Definition at line 50 of file blast_psi.h.

Referenced by BOOST_AUTO_TEST_CASE(), CdPssmInput::copyRow(), FillInAlignmentData(), PssmMaker::getPssmColumnResidues(), PssmMaker::printAlignmentByColumn(), printMsa(), CdPssmInput::Process(), PSIMsaNew(), CdPssmInput::read(), SU_PSSMInput::SU_PSSMInput(), CdPssmInput::unalignLeadingTrailingGaps(), CPsiBlastInputClustalW::x_CopyQueryToMsa(), CPsiBlastInputData::x_CopyQueryToMsa(), CPsiBlastInputClustalW::x_ExtractAlignmentData(), and CPsiBlastInputData::x_ProcessDenseg().

The documentation for this struct was generated from the following file:

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