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NCBI C++ ToolKit: LookupTableWrap Struct Reference

Search Toolkit Book for LookupTableWrap

Wrapper structure for different types of BLAST lookup tables. More...

#include <algo/blast/core/lookup_wrap.h>

Wrapper structure for different types of BLAST lookup tables.

Definition at line 50 of file lookup_wrap.h.

Pointer to the actual lookup table structure.

Definition at line 52 of file lookup_wrap.h.

Referenced by Blast_RunFullSearch(), BlastChooseNaExtend(), BlastChooseProteinScanSubject(), BlastNaExtendJumper(), BlastNaWordFinder(), BlastRPSScanSubject(), BOOST_AUTO_TEST_CASE(), CSetupFactory::CreateLookupTable(), CompressedAalookupTestFixture::FillLookupTable(), AalookupTestFixture::FillLookupTable(), JumperNaWordFinder(), LookupTableWrapInit_MT(), PHIBlastScanSubject(), TestFixture::RunScanSubject(), s_BlastAaScanSubject(), s_BlastAaWordFinder_OneHit(), s_BlastAaWordFinder_TwoHit(), s_BlastCompressedAaScanSubject(), s_BlastNaExtend(), s_BlastNaExtendAligned(), s_BlastNaExtendDirect(), s_BlastNaHashScanSubject_Any(), s_BlastNaScanSubject_8_4(), s_BlastNaScanSubject_Any(), s_BlastRPSWordFinder_OneHit(), s_BlastRPSWordFinder_TwoHit(), s_BlastSmallAaScanSubject(), s_BlastSmallNaExtend(), s_BlastSmallNaExtendAlignedOneByte(), s_BlastSmallNaScanSubject_4_1(), s_BlastSmallNaScanSubject_5_1(), s_BlastSmallNaScanSubject_6_1(), s_BlastSmallNaScanSubject_6_2(), s_BlastSmallNaScanSubject_7_1(), s_BlastSmallNaScanSubject_7_2(), s_BlastSmallNaScanSubject_7_3(), s_BlastSmallNaScanSubject_8_1Mod4(), s_BlastSmallNaScanSubject_8_2Mod4(), s_BlastSmallNaScanSubject_8_3Mod4(), s_BlastSmallNaScanSubject_8_4(), s_BlastSmallNaScanSubject_Any(), s_GetMinimumSubjSeqLen(), s_MB_DiscWordScanSubject_1(), s_MB_DiscWordScanSubject_11_18_1(), s_MB_DiscWordScanSubject_11_21_1(), s_MB_DiscWordScanSubject_TwoTemplates_1(), s_MBChooseScanSubject(), s_MBLookup(), s_MBScanSubject_10_1(), s_MBScanSubject_10_2(), s_MBScanSubject_10_3(), s_MBScanSubject_11_1Mod4(), s_MBScanSubject_11_2Mod4(), s_MBScanSubject_11_3Mod4(), s_MBScanSubject_9_1(), s_MBScanSubject_9_2(), s_MBScanSubject_Any(), s_NaChooseScanSubject(), s_NaHashChooseScanSubject(), s_NaLookup(), s_RPSPreliminarySearchEngine(), s_SmallNaChooseScanSubject(), s_SmallNaLookup(), TestFixture::ScanCheckHitsCore(), TestFixture::ScanMaxHitsTestCore(), TestFixture::ScanOffsetTestCore(), NuclWordFinderTextFixture::setupAll(), NuclWordFinderTextFixture::setupLookupTable(), and CPhiblastTestFixture::x_FindQueryOccurrences().

What kind of a lookup table it is?

Definition at line 51 of file lookup_wrap.h.

Referenced by BlastChooseNaExtend(), BlastChooseNucleotideScanSubject(), BlastChooseNucleotideScanSubjectAny(), BlastChooseProteinScanSubject(), BlastNaExtendJumper(), BlastNaWordFinder(), BlastRPSScanSubject(), BOOST_AUTO_TEST_CASE(), CompressedAalookupTestFixture::FillLookupTable(), JumperNaWordFinder(), LookupTableWrapInit_MT(), PHIBlastScanSubject(), TestFixture::RunScanSubject(), s_BlastAaScanSubject(), s_BlastAaWordFinder_OneHit(), s_BlastAaWordFinder_TwoHit(), s_BlastCompressedAaScanSubject(), s_BlastNaExtend(), s_BlastNaExtendAligned(), s_BlastNaExtendDirect(), s_BlastNaHashScanSubject_Any(), s_BlastNaScanSubject_8_4(), s_BlastNaScanSubject_Any(), s_BlastSetUpAuxStructures(), s_BlastSmallAaScanSubject(), s_BlastSmallNaScanSubject_4_1(), s_BlastSmallNaScanSubject_5_1(), s_BlastSmallNaScanSubject_6_1(), s_BlastSmallNaScanSubject_6_2(), s_BlastSmallNaScanSubject_7_1(), s_BlastSmallNaScanSubject_7_2(), s_BlastSmallNaScanSubject_7_3(), s_BlastSmallNaScanSubject_8_1Mod4(), s_BlastSmallNaScanSubject_8_2Mod4(), s_BlastSmallNaScanSubject_8_3Mod4(), s_BlastSmallNaScanSubject_8_4(), s_BlastSmallNaScanSubject_Any(), s_GetMinimumSubjSeqLen(), s_MB_DiscWordScanSubject_1(), s_MB_DiscWordScanSubject_11_18_1(), s_MB_DiscWordScanSubject_11_21_1(), s_MB_DiscWordScanSubject_TwoTemplates_1(), s_MBChooseScanSubject(), s_MBScanSubject_10_1(), s_MBScanSubject_10_2(), s_MBScanSubject_10_3(), s_MBScanSubject_11_1Mod4(), s_MBScanSubject_11_2Mod4(), s_MBScanSubject_11_3Mod4(), s_MBScanSubject_9_1(), s_MBScanSubject_9_2(), s_MBScanSubject_Any(), s_NaChooseScanSubject(), s_NaHashChooseScanSubject(), s_SmallNaChooseScanSubject(), TestFixture::ScanCheckHitsCore(), TestFixture::ScanMaxHitsTestCore(), TestFixture::ScanOffsetTestCore(), NuclWordFinderTextFixture::setupAll(), NuclWordFinderTextFixture::setupLookupTable(), and NuclWordFinderTextFixture::setupSequenceOffsets().

The documentation for this struct was generated from the following file:

• include/algo/blast/core/lookup_wrap.h

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