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NCBI C++ ToolKit: LookupTableOptions Struct Reference

Search Toolkit Book for LookupTableOptions

Options needed to construct a lookup table Also needed: query sequence and query length. More...

#include <algo/blast/core/blast_options.h>

Options needed to construct a lookup table Also needed: query sequence and query length.

Definition at line 206 of file blast_options.h.

◆ db_filter Boolean LookupTableOptions::db_filter ◆ lut_type ◆ max_db_word_count Uint1 LookupTableOptions::max_db_word_count ◆ mb_template_length Int4 LookupTableOptions::mb_template_length ◆ mb_template_type Int4 LookupTableOptions::mb_template_type ◆ phi_pattern char* LookupTableOptions::phi_pattern ◆ program_number ◆ stride Uint4 LookupTableOptions::stride ◆ threshold double LookupTableOptions::threshold ◆ word_size Int4 LookupTableOptions::word_size

Determines the size of the lookup table.

Definition at line 211 of file blast_options.h.

Referenced by BLAST_FillLookupTableOptions(), BLAST_ValidateOptions(), BlastAaLookupTableNew(), BlastChooseNaLookupTable(), BlastCompressedAaLookupTableNew(), BlastMBLookupTableNew(), BlastNaHashLookupTableNew(), BlastNaLookupTableNew(), BlastSmallNaLookupTableNew(), BOOST_AUTO_TEST_CASE(), CLookupTableOptions::DebugDump(), CIndexedDb_New::DoPreSearch(), CBlastOptionsLocal::GetWordSize(), LookupTableOptionsValidate(), CIndexedDb_Old::PreSearch(), s_FillDiscMBTable(), CBlastOptionsLocal::SetLookupTableType(), CBlastOptionsLocal::SetWordSize(), and SubjectIndexNew().

The documentation for this struct was generated from the following file:

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