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NCBI C++ ToolKit: Block::Range Struct Reference

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#include <algo/structure/struct_util/su_block_multiple_alignment.hpp>

Definition at line 289 of file su_block_multiple_alignment.hpp.

Definition at line 290 of file su_block_multiple_alignment.hpp.

Referenced by AddDomain(), CalculatePSSMScore(), BLASTer::CalculateSelfHitScores(), BlockMultipleAlignment::CheckAlignedBlock(), UngappedAlignedBlock::Clone(), UnalignedBlock::Clone(), BlockMultipleAlignment::CreateBlock(), Threader::CreateCorDef(), BlockAligner::CreateNewPairwiseAlignmentsByBlockAlignment(), CreateNewPairwiseAlignmentsByBlockExtension(), BlockMultipleAlignment::CreateNewUnalignedBlockBetween(), CreatePairwiseSeqAlignFromMultipleRow(), Threader::CreateQrySeq(), BlockMultipleAlignment::DeleteBlock(), AlignmentUtility::DoLeaveNOut(), AlignmentUtility::DoLeaveOneOut(), Threader::EstimateNRandomStarts(), BlockMultipleAlignment::ExtractRows(), FillInAlignmentData(), FreezeBlocks(), BlockMultipleAlignment::GetAlignedDependentIndex(), GetAlignedResidueIndexes(), BlockMultipleAlignment::GetAlignedSlaveIndex(), BlockMultipleAlignment::GetAlignmentColor(), BlockMultipleAlignment::GetAlignmentIndex(), BlockMultipleAlignment::GetBlock(), BlockMultipleAlignment::GetCharacterTraitsAt(), Threader::GetGeometryViolations(), UnalignedBlock::GetIndexAt(), BlockMultipleAlignment::GetLoopLength(), BlockMultipleAlignment::HighlightAlignedColumnsOfMasterRange(), MapBlockFromConsensusToMaster(), MapDependentToMaster(), BlockMultipleAlignment::MergeAlignment(), BlockMultipleAlignment::MergeBlocks(), UnalignedBlock::MinResidues(), BlockMultipleAlignment::MoveBlockBoundary(), StructureWindow::OnAlignStructures(), SequenceViewerWindow::OnHighlight(), BlockMultipleAlignment::OptimizeBlock(), StructureObject::RealignStructure(), AlignmentUtility::ScoreRowByPSSM(), BlockMultipleAlignment::ShiftRow(), UpdateViewer::SortByPSSM(), BlockMultipleAlignment::SplitBlock(), and BlockMultipleAlignment::ZipAlignResidue().

Definition at line 290 of file su_block_multiple_alignment.hpp.

Referenced by BLASTer::CalculateSelfHitScores(), BlockMultipleAlignment::CheckAlignedBlock(), UngappedAlignedBlock::Clone(), UnalignedBlock::Clone(), BlockMultipleAlignment::CreateBlock(), Threader::CreateCorDef(), BlockAligner::CreateNewPairwiseAlignmentsByBlockAlignment(), CreateNewPairwiseAlignmentsByBlockExtension(), BlockMultipleAlignment::CreateNewUnalignedBlockBetween(), Threader::CreateQrySeq(), BlockMultipleAlignment::DeleteBlock(), AlignmentUtility::DoLeaveNOut(), AlignmentUtility::DoLeaveOneOut(), Threader::EstimateNRandomStarts(), BlockMultipleAlignment::ExtractRows(), FillInAlignmentData(), FreezeBlocks(), BlockMultipleAlignment::GetCharacterTraitsAt(), Threader::GetGeometryViolations(), UnalignedBlock::GetIndexAt(), BlockMultipleAlignment::GetLoopLength(), MapBlockFromConsensusToMaster(), BlockMultipleAlignment::MergeAlignment(), UnalignedBlock::MinResidues(), BlockMultipleAlignment::MoveBlockBoundary(), SequenceViewerWindow::OnHighlight(), BlockMultipleAlignment::OptimizeBlock(), StructureObject::RealignStructure(), BlockMultipleAlignment::ShiftRow(), BlockMultipleAlignment::SplitBlock(), and BlockMultipleAlignment::ZipAlignResidue().

The documentation for this struct was generated from the following files:

• include/algo/structure/struct_util/su_block_multiple_alignment.hpp
• src/app/cn3d/block_multiple_alignment.hpp

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