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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/struc__comm__field_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/edit/struc_comm_field.cpp Source File

(seqdesc && seqdesc->

()) {

(user && IsStructuredCommentForThisField(*user)) {

CUser_object::TData::iterator it = user->

().begin();

(it != user->

().end()) {

((*it)->IsSetLabel() && (*it)->GetLabel().IsStr()

&&

((*it)->GetLabel().GetStr(), m_FieldName)) {

rval |= SetVal(**it, newValue, existing_text);

(!(*it)->IsSetData()) {

it = user->

().erase(it);

(!found && (!

(m_ConstraintFieldName, m_FieldName) || !m_StringConstraint)) {

new_field->

().SetStr(m_FieldName);

x_InsertFieldAtCorrectPosition(*user, new_field);

(user->

().empty()) {

user.

().push_back(field);

(field_names.size() == 0) {

user.

().push_back(field);

vector<string>::iterator sit = field_names.begin();

CUser_object::TData::iterator fit = user.

().begin();

(sit != field_names.end() && fit != user.

().end()) {

field_label = (*fit)->GetLabel().GetStr();

user.

().insert(fit, field);

user.

().push_back(field);

field.

().SetStr(curr_val);

field.

().SetStr(newValue);

field.

().SetStr(newValue);

vector<string> vals =

(

);

(vals.size() > 0) {

(seqdesc && seqdesc->

()) {

user = &(seqdesc->

());

CUser_object::TData::const_iterator it = user->

().begin();

(it != user->

().end()) {

((*it)->IsSetLabel() && (*it)->GetLabel().IsStr() && (*it)->IsSetData()

((*it)->GetData().Which()) {

vals.push_back((*it)->GetData().GetStr());

string_constraint.

();

vector<CConstRef<CObject> >

;

.

(&(*desc_ci));

vector<CRef<CApplyObject> >

;

vector<CConstRef<CObject> > objs;

vector<CConstRef<CObject> > these_objs =

(*bi);

objs.insert(objs.end(), these_objs.begin(), these_objs.end());

vector<CConstRef<CObject> > these_objs =

(*bi);

objs.push_back (*it);

(seqdesc && seqdesc->

()) {

user = &(seqdesc->

());

(!(*it)->IsSetLabel()

|| !(*it)->GetLabel().IsStr()) {

= (*it)->GetLabel().GetStr();

(seqdesc && seqdesc->

()) {

user = &(seqdesc->

());

CUser_object::TData::iterator it = user->

().begin();

(it != user->

().end()) {

do_erase =

;

((*it)->IsSetLabel() && (*it)->GetLabel().IsStr() &&

((*it)->GetLabel().GetStr(),

)) {

it = user->

().erase(it);

(user->

().empty()) {

vector<CConstRef<CObject> > related;

}

(obj_desc) {

related.push_back(obj);

vector<CConstRef<CObject> > related;

}

(obj_desc) {

related.push_back(obj);

root = prefix;

(!comment_rules) {

(errors.size() == 0) {

(errors.size() == 0) {

(!comment_rules) {

field.

(obj,

, existing_text);

(pos != string::npos) {

program =

.substr(0, pos);

new_val = program;

previous = field.

(obj);

previous = field.

(obj);

field.

(obj,

, existing_text);

field.

(obj,

, existing_text);

field.

(obj,

, existing_text);

field.

(obj,

, existing_text);

field.

(obj,

, existing_text);

field.

(obj);

method = field.

(obj);

method = field.

(obj);

field.

(obj);

field.

(obj);

field.

(obj);

field.

(obj);

field.

(obj);

=

;

User-defined methods of the data storage class.

User-defined methods of the data storage class.

CSeq_entry_Handle GetSeqEntryForSeqdesc(CRef< CScope > scope, const CSeqdesc &seq_desc)

int Compare(const CObject_id &oid2) const

static bool DoesSeqMatchConstraint(CBioseq_Handle bsh, CRef< CStringConstraint > string_constraint)

namespace ncbi::objects::

bool DoesTextMatch(const string &text)

void Assign(const CStringConstraint &other)

Include a standard set of the NCBI C++ Toolkit most basic headers.

The NCBI C++ standard methods for dealing with std::string.

const char * kFieldTypeSeqId

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

CScope & GetScope(void) const

Get scope this handle belongs to.

void Reset(void)

Reset reference object.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static bool IsBlank(const CTempString str, SIZE_TYPE pos=0)

Check if a string is blank (has no text).

static void TruncateSpacesInPlace(string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string (in-place)

static SIZE_TYPE Find(const CTempString str, const CTempString pattern, ECase use_case=eCase, EDirection direction=eForwardSearch, SIZE_TYPE occurrence=0)

Find the pattern in the string.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static bool Equal(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2, ECase use_case=eCase)

Test for equality of a substring with another string.

static const char label[]

const TStr & GetStr(void) const

Get the variant data.

bool IsSetData(void) const

the object itself Check if a value has been assigned to Data data member.

const TData & GetData(void) const

Get the Data member data.

bool IsStr(void) const

Check if variant Str is selected.

bool IsSetLabel(void) const

field label Check if a value has been assigned to Label data member.

TData & SetData(void)

Assign a value to Data data member.

const TStr & GetStr(void) const

Get the variant data.

void SetLabel(TLabel &value)

Assign a value to Label data member.

const TData & GetData(void) const

Get the Data member data.

void SetType(TType &value)

Assign a value to Type data member.

void ResetData(void)

Reset Data data member.

void SetData(TData &value)

Assign a value to Data data member.

const TLabel & GetLabel(void) const

Get the Label member data.

bool IsSetData(void) const

Check if a value has been assigned to Data data member.

vector< CStringUTF8 > TStrs

vector< CRef< CUser_field > > TData

E_Choice Which(void) const

Which variant is currently selected.

@ e_not_set

No variant selected.

const TLocation & GetLocation(void) const

Get the Location member data.

const TUser & GetUser(void) const

Get the variant data.

TUser & SetUser(void)

Select the variant.

bool IsUser(void) const

Check if variant User is selected.

@ e_User

user defined object

@ eMol_na

just a nucleic acid

bool DoesObjectMatchFieldConstraint(const CObject &object, const string &field_name, CRef< objects::edit::CStringConstraint > string_constraint, CRef< objects::CScope > scope)

const string version

version string

@ eExistingText_replace_old

bool AddValueToString(string &str, const string &value, EExistingText existing_text)

Add text to an existing string, using the "existing_text" directive to combine new text with existing...

const string kANIPreviousName

const string kANIAnalysis1

const string kANIA1SubjectCoverage

const string kANIA1QueryCoverage

const string kANIA2SubjectCoverage

const string kANIA2QueryCoverage

USING_SCOPE(ncbi::objects)

const string kExpectedFinalVersion

const string kANICurrentName

const string kAssemblyMethod

const string kGenomeAssemblyData

const string kANIThisGenome

const string kANIA1Genome

const string kSingleCellAmplification

const string kANIAnalysisType

const string kANIDateUpdated

const string kGenomeCoverage

const string kStructuredCommentSuffix

const string kStructuredComment

#define ANI_STRING_FIELD_IMPLEMENTATION(Fieldname)

const string kStructuredCommentPrefix

const string kReferenceGuidedAssembly

const string kANIA2Genome

const string kANIAnalysis2

bool s_UserFieldCompare(const CRef< CUser_field > &f1, const CRef< CUser_field > &f2)

const string kSequencingTechnology

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