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NCBI C++ ToolKit: include/util/strsearch.hpp Source File

ePrefixMatch = (1 << 0),

eSuffixMatch = (1 << 1),

eWholeWordMatch = (ePrefixMatch | eSuffixMatch)

whole_word = eSubstrMatch);

& word_delimeters,

invert_delimiters =

);

SetWordDelimiters(

& word_delimeters,

invert_delimiters =

);

AddDelimiters(

& word_delimeters);

AddDelimiters(

ch);

InitCommonDelimiters();

m_WholeWord = whole_word;

Search(

.c_str(), pos,

.length());

IsWholeWord(

*

,

x_InitPattern(

);

<

MatchType>

<

MatchType>

m_Primed(

), m_CaseSensitive(case_sensitive)

<

MatchType>

( !m_CaseSensitive ) {

word_len = (

)temp.length();

(

= 0;

< word_len; ++

) {

= m_States[

].GetNextState(temp[

]);

(

== eFailState )

;

( ;

< word_len; ++

) {

m_States.push_back(new_state);

<

MatchType>

( m_Primed )

;

<

MatchType>

(

(

) >= m_States.size() ) {

&(m_States[

]);

<

MatchType>

<

MatchType>

(

(

) >= m_States.size() ) {

initial = GetInitialState();

( (

= GetNextState(m_States[

],

)) == eFailState ) {

(

== initial ) {

<

MatchType>

in_queue [qbeg] =

;

( ; in_queue [q] != 0; q = in_queue [q])

;

in_queue [

] = 0;

<

MatchType>

vector<int> state_queue(m_States.size());

m_States[GetInitialState()].GetTransitions() ) {

m_States[s].SetOnFailure(0);

QueueAdd(state_queue, qbeg, s);

(state_queue [qbeg] != 0) {

= state_queue [qbeg];

m_States[

].GetTransitions() ) {

QueueAdd(state_queue, qbeg, s);

= m_States[

].GetOnFailure();

FindFail(

, s, it->first);

<

MatchType>

( (

= GetNextState(

, ch)) == eFailState) {

m_States[new_state].SetOnFailure(

);

( m_States[

].GetMatches().begin(),

m_States[

].GetMatches().end(),

back_inserter(m_States[new_state].GetMatches()) );

<

MatchType>

m_States[

].GetMatches();

<

MatchType>

m_States[

].IsMatchFound();

<

MatchType>

This implemetation uses the Boyer-Moore alg.

container_type::const_iterator const_iterator

const_iterator end() const

const_iterator find(const key_type &key) const

Include a standard set of the NCBI C++ Toolkit most basic headers.

The NCBI C++ standard methods for dealing with std::string.

static DLIST_TYPE *DLIST_NAME() next(DLIST_LIST_TYPE *list, DLIST_TYPE *item)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

void FindFail(int state, int new_state, char ch)

void AddWord(const string &word, const MatchType &match)

NStr::ECase m_CaseSensitive

vector< MatchType > & GetMatches(void)

vector< CState > m_States

void QueueAdd(vector< int > &in_queue, int qbeg, int val)

int GetNextState(int state, char letter) const

TMapCharInt m_Transitions

int GetOnFailure(void) const

const TMapCharInt & GetTransitions(void) const

void AddWord(const string &word)

const vector< MatchType > & GetMatches(void) const

void SetOnFailure(int state)

CTextFsa(bool case_sensitive=false)

const vector< MatchType > & GetMatches(int state) const

CTextFsm(bool case_sensitive=false)

void SetWordMatching(unsigned int whole_word=eWholeWordMatch)

Set word matching mode.

int GetNextState(char letter) const

bool IsMatchFound(void) const

bool IsMatchFound(int state) const

map< char, int > TMapCharInt

void AddMatch(const MatchType &match)

vector< MatchType > m_Matches

void AddTransition(char letter, int to)

CState * GetState(int state)

bool IsPrimed(void) const

int GetInitialState(void) const

vector< size_t > m_LastOccurrence

vector< unsigned char > m_WordDelimiters

static const int sm_AlphabetSize

int GetNextState(const CState &from, char letter) const

size_t Search(const string &text, size_t pos=0) const

Search for the pattern over text starting at position pos.

NCBI_NS_STD::string::size_type SIZE_TYPE

ECase

Which type of string comparison.

static string & ToUpper(string &str)

Convert string to upper case – string& version.

@ eNocase

Case insensitive compare.

unsigned int

A callback function used to compare two keys in a database.

static void text(MDB_val *v)

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

void copy(Njn::Matrix< S > *matrix_, const Njn::Matrix< T > &matrix0_)

static int match(PCRE2_SPTR start_eptr, PCRE2_SPTR start_ecode, uint16_t top_bracket, PCRE2_SIZE frame_size, pcre2_match_data *match_data, match_block *mb)

NCBI_XUTIL_EXPORT

Parameter to control printing diagnostic message about conversion of static array data from a differe...

static Uint4 letter(char c)

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