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NCBI C++ ToolKit: src/algo/blast/unit_tests/api/stat_unit_test.cpp Source File

* kMatrix =

;

kGapOpen = 11;

kGapExtend = 1;

vector<int> score = {1201, 1204, 1179, 2332};

vector<int> len1 = {294, 294, 294, 1801};

vector<int> len2 = {422, 416, 418, 1671};

(

=0;

< score.size();

++) {

BOOST_REQUIRE(evalue >= 0.0);

Definitions and prototypes used by blast_stat.c to calculate BLAST statistics.

Int2 Blast_KarlinBlkGappedCalc(Blast_KarlinBlk *kbp, Int4 gap_open, Int4 gap_extend, const char *matrix_name, Blast_Message **error_return)

Fills in lambda, H, and K values, as calculated by Stephen Altschul in Methods in Enzy.

Blast_KarlinBlk * Blast_KarlinBlkNew(void)

Callocs a Blast_KarlinBlk.

Blast_KarlinBlk * Blast_KarlinBlkFree(Blast_KarlinBlk *kbp)

Deallocates the KarlinBlk.

double BLAST_SpougeStoE(Int4 S, Blast_KarlinBlk *kbp, Blast_GumbelBlk *gbp, Int4 qlen, Int4 slen)

Calculates the Expect value based upon the Spouge's FSC method.

Int2 Blast_GumbelBlkCalc(Blast_GumbelBlk *gbp, Int4 gap_open, Int4 gap_extend, const char *matrix_name, Blast_Message **error_return)

Fills in gumbel parameters to estimate p-value using FSC.

BOOST_AUTO_TEST_SUITE_END() static int s_GetSegmentFlags(const CBioseq &bioseq)

Ensure direct dependencies on enough of the core xncbi library to satisfy shared libraries that depen...

BOOST_AUTO_TEST_SUITE(psiblast_iteration)

BOOST_AUTO_TEST_CASE(EvalueForProteinFSC)

Structure to hold the Gumbel parameters (for FSC).

Structure to hold the Karlin-Altschul parameters.

Structure to hold the a message from the core of the BLAST engine.

Utility stuff for more convenient using of Boost.Test library.

voidp calloc(uInt items, uInt size)

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