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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/srcedit__tool_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/srcedit_tool.cpp Source File

66  "Bulk Source Editing"

,

67  "Assistant for preparing sequences " 68  "for submission to GenBank"

,

70  "Bulk Source Editing"

),

78  return "srcedit_tool"

;

84  return "Submission Preparation Tool"

;

159  const CObject

* ptr = it2->object.GetPointer();

160  if

(

dynamic_cast<const CSeq_entry

*

>

(ptr) ||

163  dynamic_cast<const CSeq_id

*

>

(ptr))

205  m_Descr

=

"Submission Preparation Job"

;

212  string

changelist =

""

;

214

vector<CRef<objects::CSeq_entry> >

entries

;

217  const CObject

* ptr = it->object.GetPointer();

220  const

objects::CSeq_entry* seqEntry =

dynamic_cast<const

objects::CSeq_entry*

>

(ptr);

223

e->Assign(*seqEntry);

226  const

objects::CSeq_submit* seqsubmit =

dynamic_cast<const

objects::CSeq_submit*

>

(ptr);

228

submit.

Reset

(

new

objects::CSeq_submit());

229

submit->Assign(*submit);

234

submit =

new

objects::CSeq_submit();

235

submit->SetSub().SetContact().SetFirst_name(

""

);

236

submit->SetSub().SetContact().SetLast_name(

""

);

238

new_auth->

SetName

().SetName().SetLast(

""

);

239

new_auth->

SetName

().SetName().SetFirst(

""

);

240

submit->SetSub().SetCit().SetAuthors().SetNames().SetStd().push_back(new_auth);

243

submit->SetData().SetEntrys().push_back (*it);

246

item->

SetItem

().SetSubmit(*submit);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

CDataLoadingAppJob - a base class for Jobs loading data into projects.

void AddProjectItem(objects::CProjectItem &item)

CRef< objects::CScope > m_Scope

CDataLoadingAppTask - a task that executes CDataLoadingAppJob.

CProjectService - a service providing API for operations with Workspaces and Projects.

CProjectSelectOptions - describes how new Project Items shall be added to a workspace.

void Set_CreateNewProject(const string &folder=kEmptyStr)

CSrcEditJob(const CSrcEditParams &params)

virtual void x_CreateProjectItems()

override this function in derived classes and populate m_Items.

bool Create(wxWindow *parent, wxWindowID id=10011, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL)

Creation.

void SetObjects(TConstScopedObjects *objects)

CSrcEditParams & GetData()

Data access.

virtual void LoadSettings()

void SetData(const CSrcEditParams &data)

IRegSettings An interface for objects that save / restore settings using CGuiRegistry.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

CIRef< T > GetServiceByType()

retrieves a typed reference to a service, the name of C++ type is used as the name of the service.

virtual bool IsFinalState()

True if Tool Manager has reached its final state, i.e.

virtual void InitUI()

override this function in a derived class and initialize extra members

virtual IAppTask * GetTask()

Once parameters are gathered and validated this function is called to produce the final Task object t...

virtual IRegSettings * x_GetParamsAsRegSetting()

return a pointer to Parameters object as IRegSettings interface

TConstScopedObjects m_Objects

virtual string GetExtensionIdentifier() const

returns the unique human-readable identifier for the extension the id should use lowercase letters se...

virtual string GetExtensionLabel() const

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

virtual void CleanUI()

override this function in a derived class and clean extra members

virtual CDataLoadingAppJob * x_CreateLoadingJob()

factory method for creating the job that executes the tool algorithm override in derived classes

TConstScopedObjects m_Objects

virtual bool x_ValidateParams()

validates user input in Parameters panel, report errors if any

virtual bool DoTransition(EAction action)

Performs transition if possible and returns true, otherwise the function shall warn the user about th...

CSrcEditTool()

CSrcEditTool.

virtual bool x_CreateParamsPanelIfNeeded()

returns / creates Parameters panel, override in derived classes see cpp file for example

virtual void x_SelectCompatibleInputObjects()

virtual CAlgoToolManagerParamsPanel * x_GetParamsPanel()

returns a pointer to the parameters panel, override in derived classes

string m_Descr

mutex to sync our internals

static void SetLabelByData(objects::CProjectItem &item, objects::CScope *scope=NULL)

virtual void SetLogEvent(const string &log_event)

vector< SConstScopedObject > TConstScopedObjects

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

TObjectType * Release(void)

Release a reference to the object and return a pointer to the object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

void SetName(TName &value)

Assign a value to Name data member.

void SetItem(TItem &value)

Assign a value to Item data member.

static wxAcceleratorEntry entries[3]


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