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NCBI C++ ToolKit: src/objtools/writers/src_writer.cpp Source File

,

,

& desiredFields,

(!

(bsh,

, colNames)) {

vector<pair<string,CBioseq_Handle> >& vecIdBsh,

& desiredFields,

vector<pair<string,CBioseq_Handle> > HANDLES;

(HANDLES::const_iterator it = vecIdBsh.begin(); it != vecIdBsh.end(); ++it) {

(!

(it->second, it->first, colNames)) {

vector<pair<string,CBioseq_Handle> > vecIdBsh;

(!nucsOnly || bci->IsNa()) {

vecIdBsh.push_back(make_pair(

,*bci));

& desiredFields)

(desiredFields[0] !=

) {

colNames.push_back(

);

(FIELDS::const_iterator cit = desiredFields.begin();

cit != desiredFields.end(); ++cit) {

colNames.push_back(mapIterator->second);

colNames.push_back(*cit);

& colName,

& colTitle,

& colDefault)

pColumn->

().SetField_name(colName);

pColumn->

().SetTitle(colTitle);

pColumn->

().SetString(colDefault);

.SetData().SetString();

.SetData().SetString().push_back(colDefault);

(NAMELIST::const_iterator cit=nameList.begin();

cit != nameList.end(); ++cit) {

(*cit !=

&& *cit !=

) {

(NAMELIST::const_iterator cit=nameList.begin();

cit != nameList.end(); ++cit) {

(*cit !=

) {

(NAMELIST::const_iterator cit=nameList.begin();

cit != nameList.end(); ++cit) {

(*cit !=

) {

(NAMELIST::const_iterator cit=nameList.begin();

cit != nameList.end(); ++cit) {

(*cit !=

) {

(FIELDS::const_iterator cit=defaultFields.begin();

cit != defaultFields.end();

colName = *cit;

orderedFields.push_back(colName);

lexicalFields.push_back(

);

lexicalFields.push_back(

);

lexicalFields.push_back(

);

lexicalFields.push_back(

);

lexicalFields.push_back(

);

lexicalFields.push_back(

);

lexicalFields.push_back(

);

lexicalFields.push_back(

);

lexicalFields.push_back(

);

lexicalFields.push_back(

);

lexicalFields.push_back(

);

lexicalFields.push_back(

);

lexicalFields.push_back(

);

lexicalFields.push_back(

);

(NAMELIST::const_iterator cit=nameList.begin();

cit != nameList.end(); ++cit) {

(*cit !=

&& *cit !=

) {

lexicalFields.push_back(*cit);

(NAMELIST::const_iterator cit=nameList.begin();

cit != nameList.end(); ++cit) {

(*cit !=

) {

lexicalFields.push_back(*cit);

(lexicalFields.begin(), lexicalFields.end());

(FIELDS::const_iterator cit = lexicalFields.begin();

cit != lexicalFields.end(); ++cit)

(processedFields.

(compressed_name) == processedFields.

()) {

orderedFields.push_back(*cit);

processedFields.

(compressed_name);

orderedFields;

(TVALUES::const_iterator cit = nameValPairs.begin();

cit != nameValPairs.end(); ++cit) {

subtypeNames.push_back(cit->first);

(TVALUES::const_iterator cit = nameValPairs.begin();

cit != nameValPairs.end(); ++cit) {

subtypeNames.push_back(cit->first);

& fieldName)

& fieldName)

& fieldName,

+ fieldName +

);

(this->*pHandler)(src, fieldName, pEC);

(

.

()) {

colName = displayName =

;

displayName =

;

default_id,

& desiredFields,

wantGi = ( find(desiredFields.begin(), desiredFields.end(),

) != desiredFields.end() );

wantLocalId = ( find(desiredFields.begin(), desiredFields.end(),

) != desiredFields.end() );

wantBankitId = ( find(desiredFields.begin(), desiredFields.end(),

) != desiredFields.end() );

wantDef = ( find(desiredFields.begin(), desiredFields.end(),

) != desiredFields.end() );

wantAuthor = ( find(desiredFields.begin(), desiredFields.end(),

) != desiredFields.end() );

wantAffil = ( find(desiredFields.begin(), desiredFields.end(),

) != desiredFields.end() );

(wantAuthor || wantAffil) {

* latest_sub =

;

* latest_date =

;

& sub = (*it)->GetSub();

latest_date = &curr_date;

latest_date = &curr_date;

(

.IsStd()) {

auths += comma + cnsrt;

(affil.

()) {

}

(affil.

()) {

(auths.length() > 0) {

colName =

;

displayName = colName;

(affls.length() > 0) {

colName =

;

displayName = colName;

(FIELDS::const_iterator cit = desiredFields.begin();

cit != desiredFields.end(); ++cit) {

(*cit ==

|| *cit ==

|| *cit ==

|| *cit ==

||

*cit ==

|| *cit ==

|| *cit ==

) {

(num_sources == 0) {

(!

.empty()) {

colName =

;

colName =

;

(!

.empty()) {

displayName =

;

( !oi.

() )

;

colName =

;

displayName = colName;

colName =

;

displayName = colName;

stringstream bankitIdOstr;

& pId = it->GetSeqId();

(!pId || !pId->IsGeneral()) {

& general = pId->GetGeneral();

(!general.IsSetDb() || general.GetDb() !=

) {

(!general.IsSetTag()) {

bankitIdOstr <<

;

general.GetTag().AsString(bankitIdOstr);

bankitId = bankitIdOstr.str();

(!bankitId.empty()) {

colName =

;

displayName = colName;

sequence::CDeflineGenerator().GenerateDefline(bsh);

(

.empty()) {

& colName,

displayName =

;

& colName,

displayName =

;

& colName,

displayName =

;

& colName,

displayName =

;

& colName,

displayName =

;

& colName,

displayName =

;

& colName,

list<CRef<CSubSource> > SUBSOURCES;

SUBSOURCES& subsources = src.

();

= colName;

(SUBSOURCES::const_iterator cit = subsources.begin();

cit != subsources.end(); ++cit) {

& colName,

list<CRef<COrgMod> > ORGMODS;

= colName;

(ORGMODS::const_iterator cit = orgmods.begin();

cit != orgmods.end(); ++cit) {

& orgmod = **cit;

& colName,

displayName =

;

vector< CRef< CDbtag > > DBTAGS;

(DBTAGS::const_iterator cit = tags.begin(); cit != tags.end(); ++cit) {

(!

.IsSetDb() ||

.GetDb().empty() || !

.IsSetTag()) {

(objid.

()) {

(objid.

().empty()) {

dbtagStr = objid.

();

curColName = colName;

curDisplayName = displayName;

curColName +=

.GetDb();

curDisplayName +=

.GetDb();

& colName,

displayName =

;

vector< CRef< CDbtag > > DBTAGS;

(DBTAGS::const_iterator cit = tags.begin(); cit != tags.end(); ++cit) {

(!

.IsSetDb() ||

.GetDb() !=

) {

(objid.

()) {

(objid.

().empty()) {

taxonIdStr = objid.

();

curDisplayName = displayName;

& colName,

pcrPrimersFwdNames =

;

pcrPrimersFwdSequences =

;

pcrPrimersRevNames =

;

pcrPrimersRevSequences =

;

columnSetCounter = 0;

fwdName, fwdSequence, revName, revSequence;

list<CRef<CPCRReaction> > REACTIONS;

REACTIONS& reactions = pcrset.

();

(REACTIONS::const_iterator cit = reactions.begin();

cit != reactions.end(); ++cit) {

(fwdName.empty()) {

fwdSequence +=

;

(revName.empty()) {

revSequence +=

;

keyPcrPrimersFwdNames = pcrPrimersFwdNames;

keyPcrPrimersFwdSequences = pcrPrimersFwdSequences;

keyPcrPrimersRevNames = pcrPrimersRevNames;

keyPcrPrimersRevSequences = pcrPrimersRevSequences;

(columnSetCounter > 0) {

keyPcrPrimersFwdNames, keyPcrPrimersFwdNames,

);

keyPcrPrimersFwdSequences, keyPcrPrimersFwdSequences,

);

keyPcrPrimersRevNames, keyPcrPrimersRevNames,

);

keyPcrPrimersRevSequences, keyPcrPrimersRevSequences,

);

list<CRef<CPCRPrimer> > PRIMERS;

PRIMERS& primers = pset.

();

(PRIMERS::const_iterator cit = primers.begin();

cit != primers.end(); ++cit) {

.substr(1);

list<CRef<CPCRPrimer> > PRIMERS;

PRIMERS& primers = pset.

();

(PRIMERS::const_iterator cit = primers.begin();

cit != primers.end(); ++cit) {

sequences += primer.

();

sequences.substr(1);

colName = cit->first;

(ColstubToColnames.

(colStub) == ColstubToColnames.

()) {

ColstubToColnames[colStub] =

(1,colName);

ColstubToColnames[colStub].push_back(colName);

(FIELDS::const_iterator cit = colStubs.begin();

cit != colStubs.end(); ++cit) {

COLSTUBNAMESMAP::iterator mapIter = ColstubToColnames.

(*cit);

(mapIter != ColstubToColnames.

()) {

colNames.insert(colNames.end(), mapIter->second.begin(),

mapIter->second.end());

(NAMELIST::const_iterator cit = colNames.begin();

cit != colNames.end(); ++cit) {

displayName =

.GetHeader().GetTitle();

displayName =

;

(

u=0; u < numRows; ++u) {

(NAMELIST::const_iterator cit = colNames.begin();

cit != colNames.end(); ++cit) {

* pValue =

.GetStringPtr(u);

& colName)

;

colName.substr(0,position);

& colName,

& colValue)

.SetData().SetString().push_back(colValue);

(FIELDS::const_iterator cit = fields.begin(); cit != fields.end(); ++cit) {

field = *cit;

+ field +

);

&

)

&

)

& message):

,

,

, message,

::TVecOfLines())

& message)

(severity, message);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

@Affil.hpp User-defined methods of the data storage class.

@Auth_list.hpp User-defined methods of the data storage class.

const string & GetTaxname(void) const

bool IsSetOrgMod(void) const

static string GetOrganelleByGenome(unsigned int genome)

const COrgName & GetOrgname(void) const

static string GetStringFromOrigin(unsigned int origin)

bool IsSetTaxname(void) const

ECompare Compare(const CDate &date) const

@ eCompare_before

*this comes first.

@Name_std.hpp User-defined methods of the data storage class.

@OrgMod.hpp User-defined methods of the data storage class.

static bool IsDiscouraged(const TSubtype stype, bool indexer=false)

static TSubtype GetSubtypeValue(const string &str, EVocabulary vocabulary=eVocabulary_raw)

const string & GetDivision(void) const

bool IsSetDivision(void) const

@Pubdesc.hpp User-defined methods of the data storage class.

@Seq_descr.hpp User-defined methods of the data storage class.

const CSeqTable_column & GetColumn(CTempString column_name) const

static CSrcError * Create(ncbi::EDiagSev severity, const std::string &)

CSrcError(const CLineError &other)

virtual bool xTryDefaultId(const string &id, ILineErrorListener *=nullptr)

static NAMEMAP sFieldnameToColname

virtual bool xGatherOrigin(const CBioSource &, const string &, ILineErrorListener *=nullptr)

virtual bool xFormatTabDelimited(const FIELDS &, CNcbiOstream &)

static string xPrimerSetSequences(const CPCRPrimerSet &)

static bool xIsOrgmodTypeSuppressed(COrgMod::TSubtype)

virtual bool xGatherDb(const CBioSource &, const string &, ILineErrorListener *=nullptr)

static bool ValidateFields(const FIELDS &fields, ILineErrorListener *=nullptr)

Verify that each string in fields is a valid qualifier name.

virtual bool xGatherOrgCommon(const CBioSource &, const string &, ILineErrorListener *=nullptr)

virtual bool xGatherLocalId(CBioseq_Handle, ILineErrorListener *=nullptr)

virtual bool WriteBioseqHandle(CBioseq_Handle, const FIELDS &, CNcbiOstream &)

Write a table of the specified qualifier-field entries found in the BioSource of a given Bioseq.

virtual bool xGatherPcrPrimers(const CBioSource &, const string &, ILineErrorListener *=nullptr)

static HANDLER xGetHandler(const string &)

static const FIELDS sAllSrcCheckFields

All possible fields processed by srchck application, in their canonical order.

void xPrepareTableColumn(const string &, const string &, const string &="")

static const FIELDS sDefaultSrcCheckFields

Default fields processed by srcchk application, in their canonical order.

static const FIELDS sDefaultSeqEntryFields

static const FIELDS sAllSeqEntryFields

virtual bool xGatherSubtypeFeat(const CBioSource &, const string &, ILineErrorListener *=nullptr)

bool xValueNeedsQuoting(const string &)

static bool xIsSubsourceTypeSuppressed(CSubSource::TSubtype)

void xAppendColumnValue(const string &, const string &)

static string xPrimerSetNames(const CPCRPrimerSet &)

COLUMNMAP mColnameToIndex

virtual bool xGatherId(CBioseq_Handle, ILineErrorListener *=nullptr)

string xDequotedValue(const string &)

virtual bool xGather(CBioseq_Handle, string id, const FIELDS &, ILineErrorListener *=nullptr)

CRef< CSeq_table > mSrcTable

static FIELDS xGetOrderedFieldNames(const FIELDS &)

virtual bool xGatherGi(CBioseq_Handle, ILineErrorListener *=nullptr)

static FIELDS xProcessFieldNames(const FIELDS &)

static NAMELIST xGetOrgModSubtypeNames()

static string xCompressFieldName(const string &)

bool(CSrcWriter::* HANDLER)(const CBioSource &, const string &, ILineErrorListener *)

virtual bool xGatherTaxonId(const CBioSource &, const string &, ILineErrorListener *=nullptr)

virtual bool xGatherOrgnameLineage(const CBioSource &, const string &, ILineErrorListener *=nullptr)

static NAMELIST xGetSubSourceSubtypeNames()

virtual bool WriteBioseqHandles(const vector< pair< string, CBioseq_Handle > > &, const FIELDS &, CNcbiOstream &, ILineErrorListener *=nullptr)

Write a table of the specified qualifier-field entries found in the BioSources of a vector of Bioseqs...

virtual bool xGatherOrgModFeat(const CBioSource &, const string &, ILineErrorListener *=nullptr)

string xGetColStub(const string &)

virtual bool xGatherDefline(CBioseq_Handle, ILineErrorListener *=nullptr)

string xGetOriginalId(const CBioseq_Handle &) const

virtual bool xHandleSourceField(const CBioSource &, const string &, ILineErrorListener *=nullptr)

virtual bool xGatherGenome(const CBioSource &, const string &, ILineErrorListener *=nullptr)

virtual bool xGatherTaxname(const CBioSource &, const string &, ILineErrorListener *=nullptr)

virtual bool xGatherBankitId(CBioseq_Handle, ILineErrorListener *=nullptr)

virtual bool WriteSeqEntry(const CSeq_entry &, CScope &, CNcbiOstream &, bool=false)

Write a table of all qualifier-field entries occurring in the BioSources for a given Seq-entry,...

static HANDLERMAP sHandlerMap

virtual bool xGatherDivision(const CBioSource &, const string &, ILineErrorListener *=nullptr)

static bool NCBI_UseGeoLocNameForCountry(void)

static TSubtype GetSubtypeValue(const string &str, EVocabulary vocabulary=eVocabulary_raw)

static bool NeedsNoText(const TSubtype &subtype)

static bool IsDiscouraged(const TSubtype subtype)

virtual bool PutError(const ILineError &)=0

Store error in the container, and return true if error was stored fine, and return false if the calle...

container_type::const_iterator const_iterator

container_type::iterator iterator

const_iterator begin() const

const_iterator end() const

const_iterator find(const key_type &key) const

iterator_bool insert(const value_type &val)

const_iterator find(const key_type &key) const

const_iterator end() const

API (CDeflineGenerator) for computing sequences' titles ("definitions").

std::ofstream out("events_result.xml")

main entry point for tests

static const struct name_t names[]

static const char * column

Utility macros and typedefs for exploring NCBI objects from general.asn.

#define FOR_EACH_USERFIELD_ON_USEROBJECT(Itr, Var)

FOR_EACH_USERFIELD_ON_USEROBJECT EDIT_EACH_USERFIELD_ON_USEROBJECT.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

EDiagSev

Severity level for the posted diagnostics.

@ eDiag_Error

Error message.

list< pair< string, TEnumValueType > > TValues

#define ENUM_METHOD_NAME(EnumName)

void GetLabel(string *label, ELabelType type=eDefault, TLabelFlags flags=fLabel_Default) const

Append a label for this Seq-id to the supplied string.

@ eContent

Untagged human-readable accession or the like.

string GetAccessionForId(const objects::CSeq_id &id, CScope &scope, EAccessionVersion use_version=eWithAccessionVersion, EGetIdType flags=0)

Retrieve the accession string for a Seq-id.

CSeq_entry_Handle AddTopLevelSeqEntry(CSeq_entry &top_entry, TPriority pri=kPriority_Default, EExist action=eExist_Default)

Add seq_entry, default priority is higher than for defaults or loaders Add object to the score with p...

vector< CSeq_id_Handle > TId

CConstRef< CSeq_id > GetLocalIdOrNull(void) const

CConstRef< CSeq_id > GetSeqId(void) const

Get id which can be used to access this bioseq handle Throws an exception if none is available.

CScope & GetScope(void) const

Get scope this handle belongs to.

const TId & GetId(void) const

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

static bool IsBlank(const CTempString str, SIZE_TYPE pos=0)

Check if a string is blank (has no text).

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static SIZE_TYPE Find(const CTempString str, const CTempString pattern, ECase use_case=eCase, EDirection direction=eForwardSearch, SIZE_TYPE occurrence=0)

Find the pattern in the string.

static string & Replace(const string &src, const string &search, const string &replace, string &dst, SIZE_TYPE start_pos=0, SIZE_TYPE max_replace=0, SIZE_TYPE *num_replace=0)

Replace occurrences of a substring within a string.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static bool Equal(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2, ECase use_case=eCase)

Test for equality of a substring with another string.

static string & ReplaceInPlace(string &src, const string &search, const string &replace, SIZE_TYPE start_pos=0, SIZE_TYPE max_replace=0, SIZE_TYPE *num_replace=0)

Replace occurrences of a substring within a string.

static string TruncateSpaces(const string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string.

static string & ToLower(string &str)

Convert string to lower case – string& version.

@ fConvErr_NoThrow

Do not throw an exception on error.

static const char label[]

const TDate & GetDate(void) const

Get the Date member data.

bool IsSetAffil(void) const

author affiliation Check if a value has been assigned to Affil data member.

const TAffil & GetAffil(void) const

Get the Affil member data.

const TStr & GetStr(void) const

Get the variant data.

const TAuthors & GetAuthors(void) const

Get the Authors member data.

bool IsSetAuthors(void) const

not necessarily authors of the paper Check if a value has been assigned to Authors data member.

const TName & GetName(void) const

Get the Name member data.

const TAffil & GetAffil(void) const

Get the Affil member data.

list< CRef< CAuthor > > TStd

bool IsStr(void) const

Check if variant Str is selected.

bool IsSetDate(void) const

replaces imp, will become required Check if a value has been assigned to Date data member.

bool IsSetNames(void) const

Check if a value has been assigned to Names data member.

const TStd & GetStd(void) const

Get the variant data.

bool IsSetName(void) const

Author, Primary or Secondary Check if a value has been assigned to Name data member.

const TNames & GetNames(void) const

Get the Names member data.

bool IsStd(void) const

Check if variant Std is selected.

bool IsSetAffil(void) const

Author Affiliation, Name Check if a value has been assigned to Affil data member.

const Tdata & Get(void) const

Get the member data.

const TSubtype & GetSubtype(void) const

Get the Subtype member data.

const TPcr_primers & GetPcr_primers(void) const

Get the Pcr_primers member data.

TGenome GetGenome(void) const

Get the Genome member data.

TOrigin GetOrigin(void) const

Get the Origin member data.

bool IsSetSeq(void) const

Check if a value has been assigned to Seq data member.

const Tdata & Get(void) const

Get the member data.

bool IsSetName(void) const

Check if a value has been assigned to Name data member.

bool IsSetOrg(void) const

Check if a value has been assigned to Org data member.

bool IsSetSubtype(void) const

Check if a value has been assigned to Subtype data member.

bool IsSetPcr_primers(void) const

Check if a value has been assigned to Pcr_primers data member.

const TForward & GetForward(void) const

Get the Forward member data.

const TOrg & GetOrg(void) const

Get the Org member data.

bool IsSetOrigin(void) const

Check if a value has been assigned to Origin data member.

TSubtype GetSubtype(void) const

Get the Subtype member data.

bool IsSetGenome(void) const

Check if a value has been assigned to Genome data member.

const TSeq & GetSeq(void) const

Get the Seq member data.

bool IsSetReverse(void) const

Check if a value has been assigned to Reverse data member.

const TName & GetName(void) const

Get the Name member data.

const TReverse & GetReverse(void) const

Get the Reverse member data.

const TName & GetName(void) const

Get the Name member data.

bool IsSetForward(void) const

Check if a value has been assigned to Forward data member.

bool IsSetName(void) const

Check if a value has been assigned to Name data member.

const TStr & GetStr(void) const

Get the variant data.

bool IsStr(void) const

Check if variant Str is selected.

bool IsConsortium(void) const

Check if variant Consortium is selected.

bool IsSetType(void) const

type of object within class Check if a value has been assigned to Type data member.

const TData & GetData(void) const

Get the Data member data.

const TInitials & GetInitials(void) const

Get the Initials member data.

bool IsName(void) const

Check if variant Name is selected.

E_Choice Which(void) const

Which variant is currently selected.

bool IsSetInitials(void) const

first + middle initials Check if a value has been assigned to Initials data member.

bool IsStr(void) const

Check if variant Str is selected.

bool IsSetLast(void) const

Check if a value has been assigned to Last data member.

const TStr & GetStr(void) const

Get the variant data.

const TConsortium & GetConsortium(void) const

Get the variant data.

const TLabel & GetLabel(void) const

Get the Label member data.

const TType & GetType(void) const

Get the Type member data.

const TLast & GetLast(void) const

Get the Last member data.

bool IsSetData(void) const

Check if a value has been assigned to Data data member.

const TName & GetName(void) const

Get the variant data.

TId GetId(void) const

Get the variant data.

const TMod & GetMod(void) const

Get the Mod member data.

bool IsSetDb(void) const

ids in taxonomic or culture dbases Check if a value has been assigned to Db data member.

const TLineage & GetLineage(void) const

Get the Lineage member data.

TSubtype GetSubtype(void) const

Get the Subtype member data.

const TSubname & GetSubname(void) const

Get the Subname member data.

bool IsSetCommon(void) const

common name Check if a value has been assigned to Common data member.

bool IsSetLineage(void) const

lineage with semicolon separators Check if a value has been assigned to Lineage data member.

const TCommon & GetCommon(void) const

Get the Common member data.

const TDb & GetDb(void) const

Get the Db member data.

bool IsSetOrgname(void) const

Check if a value has been assigned to Orgname data member.

const TOrgname & GetOrgname(void) const

Get the Orgname member data.

list< CRef< CPub > > Tdata

bool IsSet(void) const

Check if a value has been assigned to data member.

const Tdata & Get(void) const

Get the member data.

const TColumns & GetColumns(void) const

Get the Columns member data.

void SetHeader(THeader &value)

Assign a value to Header data member.

void SetNum_rows(TNum_rows value)

Assign a value to Num_rows data member.

TNum_rows GetNum_rows(void) const

Get the Num_rows member data.

void SetDefault(TDefault &value)

Assign a value to Default data member.

TColumns & SetColumns(void)

Assign a value to Columns data member.

const TUser & GetUser(void) const

Get the variant data.

bool IsSetPub(void) const

the citation(s) Check if a value has been assigned to Pub data member.

const TPub & GetPub(void) const

Get the Pub member data.

bool IsUser(void) const

Check if variant User is selected.

@ e_Pub

a reference to the publication

@ e_Source

source of materials, includes Org-ref

constexpr auto sort(_Init &&init)

constexpr bool empty(list< Ts... >) noexcept

const struct ncbi::grid::netcache::search::fields::KEY key

const GenericPointer< typename T::ValueType > T2 defaultValue

const GenericPointer< typename T::ValueType > T2 value

Utility macros and typedefs for exploring NCBI objects from seq.asn.

#define FOR_EACH_SEQDESC_ON_SEQDESCR(Itr, Var)

FOR_EACH_SEQDESC_ON_SEQDESCR EDIT_EACH_SEQDESC_ON_SEQDESCR.

#define FIELD_IS_SET_AND_IS(Var, Fld, Chs)

FIELD_IS_SET_AND_IS base macro.

#define GET_FIELD(Var, Fld)

GET_FIELD base macro.

const size_t countDefaultSrcCheckFields

static const string arrDefaultSrcCheckFields[]

const size_t countDefaultSeqEntryFields

static const string arrDefaultSeqEntryFields[]

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