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1 #ifndef SOURCE_QUAL_READER_HPP 2 #define SOURCE_QUAL_READER_HPP 6 #include <unordered_map> 27 const string& commandLineStr,
28 boolreadModsFromTitle,
52 void MapFile(
const string& fileName,
boolallowAcc);
ILineErrorListener * m_pEC
void MapFile(const string &fileName, bool allowAcc)
CMemorySrcFileMap(ILineErrorListener *pEC)
unordered_map< string, size_t > m_ProcessedIdsToLineNum
unique_ptr< CMemoryFileMap > m_pFileMap
void x_ProcessLine(const CTempString &line, TModList &mods)
void x_RegisterLine(size_t lineNum, const CTempString &line, bool allowAcc)
CModHandler::TModList TModList
bool GetMods(const CBioseq &bioseq, TModList &mods, bool isVerbose)
unordered_map< string, size_t > m_IdsToLineNum
vector< CTempString > m_ColumnNames
list< CModData > TModList
CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...
#define END_NCBI_SCOPE
End previously defined NCBI scope.
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
The NCBI C++/STL use hints.
void g_ApplyMods(CMemorySrcFileMap *pNameSrcFileMap, CMemorySrcFileMap *pDefaultSrcFileMap, const string &commandLineStr, bool readModsFromTitle, bool isVerbose, CModHandler::EHandleExisting mergePolicy, ILineErrorListener *pEC, CSeq_entry &entry)
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