Go to the source code of this file.
Go to the SVN repository for this file.
USING_SCOPE (objects) static void sPostError (ILineErrorListener *pEC, const string &message, const CTempString &seqId, size_t lineNum=0) static void sReportMissingMods (ILineErrorListener *pEC, const string &fileName, const CBioseq &bioseq) static void sReportMultipleMatches (ILineErrorListener *pEC, const string &fileName, size_t lineNum, const CBioseq &bioseq) static void s_PostProcessID (string &id) static void sReportDuplicateIds (ILineErrorListener *pEC, const string &fileName, size_t currentLine, size_t previousLine, const CTempString &seqId) static void sReportUnusedMods (ILineErrorListener *pEC, const string &fileName, size_t lineNum, const CTempString &seqId) static pair< size_t, size_t > s_IdTypeToNumFields (CSeq_id::E_Choice choice) static bool s_ParseFastaIdString (const CTempString &fastaString, set< CTempString, PNocase_Generic< CTempString >> &idStrings) static void s_AppendMods (const CModHandler::TModList &mods, string &title) static void sReportError (ILineErrorListener *pEC, EDiagSev severity, int subcode, const string &seqId, const string &message, ILineError::EProblem problemType=ILineError::eProblem_GeneralParsingError) static void s_PreprocessNoteMods (CModHandler::TModList &mods) void g_ApplyMods (CMemorySrcFileMap *pNamedSrcFileMap, CMemorySrcFileMap *pDefaultSrcFileMap, const string &commandLineStr, bool readModsFromTitle, bool isVerbose, CModHandler::EHandleExisting mergePolicy, ILineErrorListener *pEC, CSeq_entry &entry) ◆ g_ApplyMods()Definition at line 778 of file src_quals.cpp.
References CModHandler::AddMods(), CTitleParser::Apply(), eDiag_Warning, CModHandler::ePreserve, CModHandler::GetMods(), NStr::IsBlank(), msg(), s_AppendMods(), s_PreprocessNoteMods(), sReportError(), and objects::VisitAllBioseqs().
Referenced by CTbl2AsnApp::ProcessSecretFiles1Phase(), and CTbl2AsnApp::xProcessSecretFiles1Phase().
◆ s_AppendMods() ◆ s_IdTypeToNumFields() ◆ s_ParseFastaIdString() ◆ s_PostProcessID() ◆ s_PreprocessNoteMods() ◆ sPostError() ◆ sReportDuplicateIds() ◆ sReportError() ◆ sReportMissingMods() ◆ sReportMultipleMatches() ◆ sReportUnusedMods() ◆ USING_SCOPE()RetroSearch is an open source project built by @garambo | Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4