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NCBI C++ ToolKit: src/app/pubseq_gateway/server/split_info_utils.cpp Source File

* bytes_read = 0)

*

,

(

.IsSeq_id() ) {

(

seq_textid =

.GetSeq_id().GetTextseq_Id() ) {

( req_textid->IsSetAccession() && seq_textid->IsSetAccession() &&

( !req_textid->IsSetVersion() ||

(seq_textid->IsSetVersion() &&

req_textid->GetVersion() == seq_textid->GetVersion()) ) {

( req_textid->IsSetName() && seq_textid->IsSetName() &&

seq_id.

(

.GetSeq_id());

( !seq_id.

() ) {

seq_id.

() ==

.GetGi();

& gi_range =

.GetGi_range();

seq_id.

() >= gi_range.GetStart() &&

(

& content : chunk.

() ) {

( content->IsBioseq_place() ) {

(

& place : content->GetBioseq_place() ) {

(

&

: place->GetSeq_ids().Get() ) {

(

& chunk : split_info.

() ) {

ret.push_back(chunk->GetId());

*obj_stream >> *

;

bool GetFlag(EBlobFlags flag_value) const

virtual ERW_Result Read(void *buf, size_t count, size_t *bytes_read=0) override

Read as many as "count" bytes into a buffer pointed to by the "buf" argument.

size_t x_AvaliableCount() const

TChunks::const_iterator m_CurrentChunk

map< int, vector< char > > TChunks

virtual ERW_Result PendingCount(size_t *count) override

Via parameter "count" (which is guaranteed to be supplied non-NULL) return the number of bytes that a...

CDataChunkReader(const TChunks &chunks)

const char * x_GetCurrentDataPtr() const

TChunks::const_iterator m_EndOfChunks

map< int, vector< char > > m_Chunks

CRef< CID2S_Split_Info > DeserializeSplitInfo()

void AddDataChunk(const unsigned char *data, unsigned int size, int chunk_no)

CNcbiIstream & GetStream()

unique_ptr< CNcbiIstream > m_Stream

@ fOwnReader

Own the underlying reader.

CZipStreamDecompressor – zlib based decompression stream processor.

A very basic data-read interface.

container_type::const_iterator const_iterator

#define GI_FROM(T, value)

@ fGZip

Set of flags for gzip file support. See each flag description above.

virtual bool Equals(const CSerialObject &object, ESerialRecursionMode how=eRecursive) const

Check if both objects contain the same values.

@ eSerial_AsnBinary

ASN.1 binary.

const CTextseq_id * GetTextseq_Id(void) const

Return embedded CTextseq_id, if any.

static CObjectIStream * Open(ESerialDataFormat format, CNcbiIstream &inStream, bool deleteInStream)

Create serial object reader and attach it to an input stream.

ERW_Result

Result codes for I/O operations.

IO_PREFIX::istream CNcbiIstream

Portable alias for istream.

@ eRW_Eof

End of data, should be considered permanent.

@ eRW_Success

Everything is okay, I/O completed.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

const TChunks & GetChunks(void) const

Get the Chunks member data.

const TContent & GetContent(void) const

Get the Content member data.

TGi GetGi(void) const

Get the variant data.

bool IsGi(void) const

Check if variant Gi is selected.

const struct ncbi::grid::netcache::search::fields::SIZE size

std::istream & in(std::istream &in_, double &x_)

Reader-writer based streams.

static bool s_Matches(const CSeq_id &seq_id, const CID2S_Bioseq_Ids::C_E &id)

vector< int > GetBioseqChunks(const CSeq_id &seq_id, const CBlobRecord &blob, const unsigned char *data, unsigned int size, int chunk_no)

static bool s_ContainsBioseq(const CSeq_id &seq_id, const CID2S_Chunk_Info &chunk)

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