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NCBI C++ ToolKit: src/app/split_cache/split_cache.hpp Source File

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& suffix,

CLevelGuard(TLevel &level)

static string GetFileName(const string &key, const string &suffix, const string &ext)

void ProcessBlob(CBioseq_Handle &bh, const CSeq_id_Handle &idh)

ICache & GetIdCache(void)

set< CBlob_id > TProcessedBlobs

virtual void Init(void)

Initialize the application.

TProcessedBlobs m_ProcessedBlobs

SSplitterParams m_SplitterParams

CRef< CObjectManager > m_ObjMgr

void ProcessSeqId(const CSeq_id &seq_id)

void TestSplitBioseq(CSeq_entry_Handle seh)

virtual int Run(void)

Run the application.

CNcbiOstream & Info(void) const

set< CSeq_id_Handle > TProcessedIds

void PrintVersion(int version)

AutoPtr< ICache > m_IdCache

const CBlob_id & GetBlob_id(CSeq_entry_Handle tse)

void ProcessEntry(const CSeq_entry &entry)

AutoPtr< ICache > m_Cache

void TestSplitBlob(CSeq_id_Handle id, const CSplitContentIndex &content)

bool GetBioseqHandle(CBioseq_Handle &bh, const CSeq_id_Handle &idh)

const SSplitterParams GetParams(void) const

CRef< CGBDataLoader > m_Loader

map< CSeq_id_Handle, CRef< CSplitContentIndex > > TContentMap

void ProcessGi(TIntId gi)

TProcessedIds m_ProcessedIds

size_t GetDescCount(void) const

bool HaveSplitData(void) const

void SetSetDescCount(size_t count)

map< int, TContentFlags > TContentIndex

void SetSeqDescCount(size_t count)

size_t GetSetDescCount(void) const

bool HaveSplitAssembly(void) const

TContentFlags GetSplitContent(void) const

bool HaveSplitDesc(void) const

size_t GetSeqDescCount(void) const

bool HaveSplitOther(void) const

bool HaveSplitAnnot(void) const

TContentIndex m_ContentIndex

void IndexChunkContent(int chunk_id, const CID2S_Chunk_Content &content)

bool HaveSplitBioseq(void) const

const TContentIndex & GetContentIndex(void) const

TContentFlags m_SplitContent

BLOB cache read/write/maintenance interface.

Include a standard set of the NCBI C++ Toolkit most basic headers.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

const string version

version string

const struct ncbi::grid::netcache::search::fields::KEY key

Defines the CNcbiApplication and CAppException classes for creating NCBI applications.

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