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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/splign__util_8cpp_source.html below:

NCBI C++ ToolKit: src/algo/align/splign/splign_util.cpp Source File

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47  const size_t

hit_dim = phitrefs->size();

49  for

(

size_t i

= 0;

i

< hit_dim; ++

i

) {

52  if

(hit->GetQueryStart() >= polya_start) {

55  else if

(hit->GetQueryStop() >= polya_start) {

56

hit->Modify(1, polya_start - 1);

60  typedef

CSplign::THitRefs::iterator TI;

61

TI ii0 = phitrefs->begin();

62  for

(TI ii = ii0, ie = phitrefs->end(); ii != ie; ++ii) {

71

phitrefs->erase(ii0, phitrefs->end());

vector< THitRef > THitRefs

unsigned int TSeqPos

Type for sequence locations and lengths.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

void CleaveOffByTail(CSplign::THitRefs *phitrefs, TSeqPos polya_start)

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