RetroSearch Browse

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/sparse__graph_8hpp_source.html below:

NCBI C++ ToolKit: include/gui/widgets/seq_graphic/sparse_graph.hpp Source File

1 #ifndef GUI_WIDGETS_SEQ_GRAPHIC___SPARSE_GRAPH__HPP 2 #define GUI_WIDGETS_SEQ_GRAPHIC___SPARSE_GRAPH__HPP 63 static CCompoundID

CreateCompoundID(objects::CScope& scope,

const

objects::CSeq_id& seq_id,

const string

& remote_path);

68 bool

IsCacheGood()

const

;

72 void

GetMissingRegions(

const TSeqRange

& range, vector<TSeqRange>& missing_ranges);

78 void

x_ReadMap(

ICache

& icache,

string

tag

string

& remote_path,

string

& last_modified, time_t& last_checked,

string

md5

bm::bvector<>

& bv,

bm::word_t

* tb = 0);

80 void

x_CheckRemoteData();

87 size_t

m_DataSize = 0;

92

time_t m_LastChecked = 0;

93 bool

m_IsCacheGood =

true

;

104 return "GraphCache"

;

108 const

objects::CSeq_id& seq_id,

109 const string

& remote_path);

Serialization / compression of bvector<>. Set theoretical operations on compressed BLOBs.

Sparse constainer sparse_vector<> for integer types using bit-transposition transform.

vector< SStatStruct > TStatVec

Base64-encoded ID string that contains extractable typed fields.

void UpdateAlignStats(const TSeqRange &range, float window, CAlnStatGlyph::TStatVec &stats)

CPileUpGraph(const string &data_key)

static string CreateCacheKey(objects::CScope &scope, const objects::CSeq_id &seq_id, const string &remote_path)

CPileUpGraph.

int GetNumberOfReads(const TSeqRange &range)

static string GetStorageName()

string m_RemotePath

path to remote data or srz accession

string m_NetCacheKey

data access key

bool IsCacheGood() const

inline methods

map< string, vector< TValType > * > TUpdateMap

string m_LastModified

timestamp of the remote data last modified date as reported by www server

mutex m_DataMutex

data access mutex

map< string, unique_ptr< TSparseVector > > m_Data

map of sprasvectors, the key is used as a part of suffix of NetCache key (m_NetCacheKey + "_" + this ...

string m_SeqId

NCBI seq_id, e.g. NC_000001.

bm::sparse_vector< TValType, bm::bvector<> > TSparseVector

bm::bvector m_DataMap

bvector shows the regions m_Data exist

bool m_IsCacheGood

false value indicates that remote data were updated and the cache was reset

string m_SessionTag

A current session tag, used to separate session netcache blobs from the blobs saved by other sessions...

BLOB cache read/write/maintenance interface.

succinct sparse vector with runtime compression using bit-slicing / transposition method

Declarations of CCompoundIDPool, CCompoundID, and CCompoundIDField.

static void md5(const char *src, const char *out)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

Compressed bitset (entry point to bm.h)

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4