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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/sp__index_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/flatfile/sp_index.cpp Source File

50 #define THIS_FILE "sp_index.cpp" 84 if

(

str

.empty() || ! ibp)

92 const char

* end =

str

.data() +

str

.size();

93 while

(p < end && *p ==

' '

)

96 while

(p < end && *p >=

'0'

&& *p <=

'9'

)

98 if

(p < end && *p ==

'.'

) {

99 if

(p + 1 >= end || *(p + 1) ==

'\n'

) {

135 auto

tibnp = ibl.before_begin();

137 while

(! end_of_file) {

141

tibnp = ibl.emplace_after(tibnp, entry);

155 while

(! end_of_file &&

157 const

string_view line = finfo.

str

;

158 if

(line.starts_with(

"RM"

sv)) {

161 if

(after_SQ &&

isalpha

(line.front())) {

163

entry->

drop

true

;

172 if

(line.starts_with(

"OC"

sv))

179 if

(after_AC ==

false

) {

189 if

(tokens.num > 2) {

199 if

(! entry->

drop

) {

200 if

(after_AC ==

false

) {

202

entry->

drop

true

;

205 if

(after_OS ==

false

)

208 if

(after_OC ==

false

)

211 if

(after_RN ==

false

)

214 if

(after_SQ ==

false

)

222

(*fun)(entry,

data

->mBuf.ptr,

static_cast<Int4>

(

data

->mBuf.len));

237 for

(

auto

& it : ibl) {

DataBlk * LoadEntry(ParserPtr pp, size_t offset, size_t len)

#define ERR_FORMAT_MissingEnd

int fta_atoi(string_view sv)

bool fta_StartsWith(const char *s1, string_view s2)

#define FtaErrPost(sev, level,...)

static DLIST_TYPE *DLIST_NAME() next(DLIST_LIST_TYPE *list, DLIST_TYPE *item)

static const char * str(char *buf, int n)

int32_t Int4

4-byte (32-bit) signed integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

@ eNocase

Case insensitive compare.

IndexblkPtr InitialEntry(ParserPtr pp, FinfoBlk &finfo)

bool FindNextEntryBuf(bool end_of_file, FileBuf &fbuf, FinfoBlk &finfo, string_view keyword)

CRef< CDate_std > GetUpdateDate(string_view str, Parser::ESource source)

bool XReadFileBuf(FileBuf &fbuf, FinfoBlk &finfo)

void MsgSkipTitleFail(const char *flatfile, FinfoBlk &finfo)

bool SkipTitleBuf(FileBuf &fbuf, FinfoBlk &finfo, string_view keyword)

forward_list< unique_ptr< Indexblk > > TIndBlkList

#define ERR_ACCESSION_NoAccessNum

#define ERR_FORMAT_MissingField

#define ERR_ENTRY_InvalidLineType

const CConstRef< CSeq_id > GetAccession(const CSeq_id_Handle &id_handle)

static bool sp_err_field(const char *name)

vector< string > swissProtKeywords

bool SprotIndex(ParserPtr pp, void(*fun)(IndexblkPtr entry, char *offset, Int4 len))

static void SPGetVerNum(string_view str, IndexblkPtr ibp)

#define ParFlat_COL_DATA_SP

CRef< objects::CDate_std > date

vector< IndexblkPtr > entrylist

void PointToNextToken(char *&ptr)

TokenStatBlk TokenString(string_view str, Char delimiter)

Char * StringIStr(const Char *where, const Char *what)

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