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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/source__edit_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/edit/source_edit.cpp Source File

(src.IsSetOrg() && src.GetOrg().IsSetCommon()) {

src.SetOrg().ResetCommon();

(src.IsSetOrg() && src.GetOrg().IsSetSyn()) {

src.SetOrg().ResetSyn();

COrgName::TMod::iterator it = src.

().SetOrgname().SetMod().begin();

(it != src.

().SetOrgname().SetMod().end()) {

((*it)->GetSubtype() && (*it)->GetSubtype() == subtype) {

it = src.

().SetOrgname().SetMod().erase(it);

src.

().SetOrgname().ResetMod();

COrg_ref::TDb::iterator it = src.

().SetDb().begin();

(it != src.

().SetDb().end()) {

it = src.

().SetDb().erase(it);

(

);

found_in_both =

;

((*it1)->Equals(**it2)) {

found_in_both =

;

already_in_common =

;

((*it3)->Equals(**it1)) {

already_in_common =

;

(!already_in_common) {

common.

().SetMod().push_back(add);

vector<CRef<COrg_ref> > rq_list;

rq_list.push_back(o1);

rq_list.push_back(o2);

(!reply || reply->GetReply().size() != 2) {

(

);

}

(taxid1 == taxid2) {

->SetOrg().Assign(*o1);

tmp2->

().Assign(*o2);

common =

->MakeCommon(*tmp2);

rq->SetJoin().Set().push_back(

(

, taxid1));

rq->SetJoin().Set().push_back(

(

, taxid2));

(!reply || reply->GetReply().size() != 1) {

(

+ err_nums);

& join_reply = *(reply->GetReply().front());

(join_reply.

()) {

is_species_level =

, force_consult =

, has_nucleomorphs =

;

join_reply.

().

(is_species_level, force_consult, has_nucleomorphs);

(is_species_level) {

(

+ err_nums);

(

+ err_nums);

(

+ err_nums);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

CRef< CBioSource > MakeCommonExceptOrg(const CBioSource &other) const

@OrgMod.hpp User-defined methods of the data storage class.

bool IsSetOrgMod(void) const

void GetTaxFlags(bool &is_species_level, bool &force_consult, bool &has_nucleomorphs) const

virtual CRef< CTaxon3_reply > SendRequest(const CTaxon3_request &request)

virtual CRef< CTaxon3_reply > SendOrgRefList(const vector< CRef< COrg_ref > > &list, COrg_ref::fOrgref_parts result_parts=COrg_ref::eOrgref_default, fT3reply_parts t3result_parts=eT3reply_default)

Include a standard set of the NCBI C++ Toolkit most basic headers.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define TAX_ID_TO(T, tax_id)

SStrictId_Tax::TId TTaxId

Taxon id type.

#define ERR_POST(message)

Error posting with file, line number information but without error codes.

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

bool IsSetOrg(void) const

Check if a value has been assigned to Org data member.

const TOrg & GetOrg(void) const

Get the Org member data.

void SetOrg(TOrg &value)

Assign a value to Org data member.

const TMod & GetMod(void) const

Get the Mod member data.

bool IsSetDb(void) const

ids in taxonomic or culture dbases Check if a value has been assigned to Db data member.

const TTaxname & GetTaxname(void) const

Get the Taxname member data.

const TDb & GetDb(void) const

Get the Db member data.

bool IsSetMod(void) const

Check if a value has been assigned to Mod data member.

list< CRef< COrgMod > > TMod

bool IsSetOrgname(void) const

Check if a value has been assigned to Orgname data member.

bool IsSetTaxname(void) const

preferred formal name Check if a value has been assigned to Taxname data member.

void SetOrgname(TOrgname &value)

Assign a value to Orgname data member.

const TOrgname & GetOrgname(void) const

Get the Orgname member data.

bool IsData(void) const

Check if variant Data is selected.

const TData & GetData(void) const

Get the variant data.

bool IsSetOrg(void) const

Check if a value has been assigned to Org data member.

TRequest & SetRequest(void)

Assign a value to Request data member.

bool IsError(void) const

Check if variant Error is selected.

const TError & GetError(void) const

Get the variant data.

const TOrg & GetOrg(void) const

Get the Org member data.

const TMessage & GetMessage(void) const

Get the Message member data.

bool IsSetMessage(void) const

Check if a value has been assigned to Message data member.

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

bool RemoveMod(CBioSource &src, COrgMod::ESubtype subtype)

bool CleanupForTaxnameChange(CBioSource &src)

bool RemoveTaxId(CBioSource &src)

CRef< CBioSource > MakeCommonBioSource(const CBioSource &src1, const CBioSource &src2)

bool RemoveOldName(CBioSource &src)

void AddMissingCommonOrgMods(const COrg_ref &o1, const COrg_ref &o2, COrg_ref &common)

bool s_ProcessReply(const CT3Reply &reply, CRef< COrg_ref > org)

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