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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/sorted__proteins_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/sorted_proteins.cpp Source File

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63

fasta_ostr.

Write

(iter->first);

69

reportdlg->SetTitle(

"Sorted Proteins"

);

71

reportdlg->Show(

true

);

82  if

(

prot

.IsSetName() && !

prot

.GetName().empty()) {

88  m_Proteins

.push_back(make_pair(*b_iter, feat_label));

100  m_Proteins

.sort([](

const

pair<CBioseq_Handle, string>& prot1,

const

pair<CBioseq_Handle, string>& prot2) {

return NStr::CompareCase

(prot1.second, prot2.second) < 0; });

@ eBoth

Both preliminary and traceback stages.

FASTA-format output; see also ReadFasta in <objtools/readers/fasta.hpp>

void SetText(const wxString &text)

CNcbiOstrstreamToString class helps convert CNcbiOstrstream to a string Sample usage:

list< pair< objects::CBioseq_Handle, string > > m_Proteins

CSortedProteins(const objects::CSeq_entry_Handle &seh)

void x_SortProteinNames()

void x_GatherProteinNames()

objects::CSeq_entry_Handle m_Seh

static DLIST_TYPE *DLIST_NAME() prev(DLIST_LIST_TYPE *list, DLIST_TYPE *item)

string GetLabel(const CSeq_id &id)

virtual void Write(const CSeq_entry_Handle &handle, const CSeq_loc *location=0)

Unspecified locations designate complete sequences; non-empty custom titles override the usual title ...

const CSeqFeatData & GetData(void) const

CConstRef< CSeq_feat > GetOriginalSeq_feat(void) const

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool EqualCase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-sensitive equality of a substring with another string.

static int CompareCase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-sensitive compare of a substring with another string.

const TProt & GetProt(void) const

Get the variant data.

wxString ToWxString(const string &s)

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