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NCBI C++ ToolKit: src/gui/widgets/edit/smart_save_to_client.cpp Source File

(

&

: bioseq_ids) {

(dbtag.

() && dbtag.

() ==

) {

(!eh || !eh.

())

vector<CRef<CSeqdesc> > descs;

vector<const CSeqdesc*> to_remove;

( ; desc_ci; ++desc_ci )

to_remove.push_back(&*desc_ci);

(

desc : to_remove)

( ; direct_child_ci; ++direct_child_ci )

(

= 0;

< descs.size();

++)

new_desc->

(*descs[

]);

((*desc_it)->Equals(*new_desc))

(

.IsEmbl() ||

.IsPir() ||

.IsSwissprot() ||

.IsDdbj() ||

.IsPrf() ||

.IsPdb() ||

.IsTpe() ||

.IsTpd()) {

(

: bsh.

()) {

(!eh || !eh.

())

(; child_ci; ++child_ci) {

vector<const CSeqdesc*> to_remove;

to_remove.push_back(*desc_it);

(

desc : to_remove) {

new_desc->

(*update_date_desc);

(deadline.

() || status != eIO_Closed) {

x_written = 0;

n_written_chunk = 0;

status = cli.

(

+ n_written_chunk, datasize - n_written_chunk, &x_written);

n_written_chunk += x_written;

}

(status ==

&& n_written_chunk < datasize);

n_written_chunk;

*

=

;

total_written = 0;

runtime_error(

);

(

= 0;

< chunks; ++

) {

(total_written <

.size()) {

=

.data() + total_written;

(total_written !=

.size()) {

runtime_error(

);

vector<string> tokens;

(tokens.size() != 2)

pipe_name = tokens[0], objId = tokens[1];

ostr <<

<< objId <<

;

vector<string> tokens;

(tokens.size() != 2)

pipe_name = tokens[0], objId = tokens[1];

ostr <<

<< objId <<

;

objects::CProjectItem& projitem,

(result_type) {

runtime_error(

);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

void SetToTime(const CTime &time, EPrecision prec=ePrecision_second)

CNcbiOstrstreamToString class helps convert CNcbiOstrstream to a string Sample usage:

const CSerialObject * GetObject() const

retrieve the object pointed to as a CObject*

static bool ShouldStayInPlace(const objects::CSeqdesc &desc)

bool IsEntrys(void) const

Base class for all serializable objects.

static void SendResult(objects::CScope *scope, const objects::CProjectItem &projitem, EResultType result_type)

static void cleanup(void)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

const string & GetMsg(void) const

Get message string.

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

C * SerialClone(const C &src)

Create on heap a clone of the source object.

#define MSerial_AsnText

I/O stream manipulators –.

CSeq_entry_EditHandle GetSeq_entryEditHandle(const CSeq_entry &entry)

vector< CSeq_id_Handle > TId

TClass GetClass(void) const

CRef< CSeqdesc > RemoveSeqdesc(const CSeqdesc &v) const

TSet ConvertSeqToSet(TClass set_class=CBioseq_set::eClass_not_set) const

Convert the entry from Bioseq to Bioseq-set.

CConstRef< CBioseq_set > GetCompleteBioseq_set(void) const

Return the complete bioseq-set object.

CSeq_entry_EditHandle GetEditHandle(void) const

Get 'edit' version of handle.

bool IsSetClass(void) const

CConstRef< CSeq_entry > GetCompleteSeq_entry(void) const

Complete and get const reference to the seq-entry.

bool AddSeqdesc(CSeqdesc &v) const

const TId & GetId(void) const

@ eNonRecursive

Deprecated.

EIO_Status Open(const string &pipename, const STimeout *timeout=kDefaultTimeout, size_t pipesize=0, TFlags flags=0)

Open a client-side pipe connection.

EIO_Status Write(const void *buf, size_t count, size_t *n_written=0)

Write data to the pipe.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

@ fSplit_Tokenize

All delimiters are merged and trimmed, to get non-empty tokens only.

bool IsExpired(void) const

Check if the deadline is expired.

@ eCurrent

Use current time. See also CCurrentTime.

CTimeout g_STimeoutToCTimeout(const STimeout *sto)

Convert STimeout to CTimeout.

@ eIO_Success

everything is fine, no error occurred

bool IsSetDb(void) const

name of database or system Check if a value has been assigned to Db data member.

const TDb & GetDb(void) const

Get the Db member data.

const TGeneral & GetGeneral(void) const

Get the variant data.

@ e_General

for other databases

bool IsSetSeq_set(void) const

Check if a value has been assigned to Seq_set data member.

const TSeq_set & GetSeq_set(void) const

Get the Seq_set member data.

@ eClass_genbank

converted genbank

TUpdate_date & SetUpdate_date(void)

Select the variant.

@ e_Update_date

date of last update

@ e_not_set

No variant selected.

bool IsSetData(void) const

Check if a value has been assigned to Data data member.

list< CRef< CSeq_entry > > TEntrys

const TEntrys & GetEntrys(void) const

Get the variant data.

const TData & GetData(void) const

Get the Data member data.

Portable interprocess named pipe API for: UNIX, MS-Win.

void SleepMilliSec(unsigned long ml_sec, EInterruptOnSignal onsignal=eRestartOnSignal)

static bool GetSeqId(const T &d, set< string > &labels, const string name="", bool detect=false, bool found=false)

Utility macros and typedefs for exploring NCBI objects from seqset.asn.

#define FOR_EACH_SEQDESC_ON_SEQENTRY(Itr, Var)

FOR_EACH_SEQDESC_ON_SEQENTRY EDIT_EACH_SEQDESC_ON_SEQENTRY.

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

static EIO_Status s_ConnectToNamedPipe(CNamedPipeClient &cli, const string &pipe_name)

bool s_IsExternalRecord(const CSeq_id &id)

static CNamedPipeClient & CreateClientPipe()

static void s_DescriptorPropagateDown(CSeq_entry_EditHandle eh)

static void s_WriteToNamedPipe(const string &pipe_name, const string &msg)

static void s_DoSmartProcessing(const CSeq_entry *entry, CScope &scope)

static void s_SaveToSmartClient(CScope *scope, const CProjectItem &projitem)

static void s_ActualizeUpdateDate(CSeq_entry_EditHandle eh)

static size_t s_WriteBuffer(CNamedPipeClient &cli, const char *buf, size_t datasize)

static void s_CancelEditingSession(const CProjectItem &projitem)

static CNamedPipeClient * client

const size_t cDefaultTimeout_Seconds

static bool s_FindSmartSeqId(CBioseq_Handle bh)

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