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NCBI C++ ToolKit: src/algo/blast/gumbel_params/sls_alp.hpp Source File

<

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[]pointer_;pointer_=

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T>

(pointer_==

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double d_memory_size_in_MB

static double degree(double x_, double n_)

double John2_weight_calculation(Int4 length_)

void release_and_calculate_memory(T *&pointer_, Int4 dim_)

double * d_WD_j_const_next

double * d_WS_j_const_next

void increment_sequences()

double * d_WD_i_const_next

void simulate_alp_upto_the_given_level(Int4 M_min_)

void increment_H_weights_with_sentinels(Int4 diff_opt_)

void partially_release_memory()

array_positive< Int4 > * d_alp_pos

array_positive< Int4 > * d_H_J

array_positive< Int4 > * d_alp

void save_state(state *&state_)

void kill_upto_level(Int4 M_min_, Int4 M_level_)

double * d_WS_j_const_pred

double * d_WS_i_const_next

void increment_H_matrix()

double * d_WI_j_const_pred

void increment_W_matrix()

double * d_WI_i_const_pred

array_positive< double > * d_alp_weights

void check_time_function(Int4 ff_=0)

bool one_step_of_importance_sampling_without_weight_calculation(Int4 d_dim1_, Int4 d_dim2_)

void swap(T &a1_, T &a2_)

array_positive< state * > * d_alp_states

bool d_single_realiztion_calculation_flag

double * d_WI_j_const_next

void restore_state(Int4 nalp_, state *&state_)

array< Int4 > * d_cells_counts

void release_and_calculate_memory(T *&pointer_)

void increment_H_weights()

double * d_WI_i_const_next

array_positive< Int4 > * d_H_I

void increment_W_weights()

double * d_WS_i_const_pred

double * d_WD_j_const_pred

void simulate_alp_upto_the_given_number(Int4 nalp_)

double * d_WD_i_const_pred

array< Int4 > * d_cells_counts

int32_t Int4

4-byte (32-bit) signed integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

The NCBI C++/STL use hints.

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