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NCBI C++ ToolKit: include/gui/widgets/aln_score/simple_methods.hpp Source File

1 #ifndef GUI_WIDGETS_ALN_SCORE___SIMPLE_METHODS__HPP 2 #define GUI_WIDGETS_ALN_SCORE___SIMPLE_METHODS__HPP 61

fIgnoreEmptySpace = 0x01,

70 void

SetOptions(

int

options);

72 void

CreateColorTable(

int size

);

77 virtual string GetName

()

const

;

94

TScore& col_score, TScoreVector& scores);

108 void

x_Init(

int colors

);

139 virtual string GetName

()

const

;

181 void

CreateColorTable();

183 virtual string GetName

()

const

;

223 virtual string GetName

()

const override

;

229 virtual int GetType

()

const override

;

243

TScore& col_score, TScoreVector& scores)

override

;

261 void

SetSequenceLevel(

bool

seq_level =

true

);

265 int

m_ColumnCount = 0;

266 bool

m_SequenceLevel =

false

;

CNonSynonymousScoringMethod - implementation of IScoringMethod.

CRgbaGradColorTable m_ColorTable

virtual bool IsAverageable() const override

return "true" if scores could be averaged

virtual bool CanCalculateScores(const IScoringAlignment &aln) override

Do we have what it takes to calculate scores? e.g. a master row selected?

virtual bool NeedsTranslation() const override

void SetSequenceLevel(bool seq_level=true)

class CRgbaColor provides a simple abstraction for managing colors.

CRgbaGradColorTable Provides a storage for colors (to eliminate color creation overhead) and Function...

CSimpleScoringMethod - trivial implementation of IScoringMethod.

unique_ptr< CMenuItem > m_Menu

CRgbaGradColorTable m_ColorTable

CRgbaColor m_Worst

combination of EOptions flags

vector< int > m_vCharCounts

char m_Space

histogramm of characters

CRgbaColor m_NoScoreColor

vector< CRgbaColor > m_vColors

IColumnScoringMethod - column-based method.

virtual void CalculateScores(char cons, const string &column, IScoringMethod::TScore &col_score, IScoringMethod::TScoreVector &scores)=0

virtual bool CanCalculateScores(const IScoringAlignment &aln)=0

Do we have what it takes to calculate scores? e.g. a master row selected?

IRowScoringMethod - row-based method.

IScoringMethod represents an abstract algorithm for calculating alignment scores and assigning colors...

virtual void SetColorForNoScore(IScoringMethod::EColorType type, const CRgbaColor &color)=0

virtual int GetSupportedColorTypes() const =0

returns a combination of EColorType flags

virtual const CRgbaColor & GetColorForScore(TScore score, EColorType type) const =0

returns a color corresponding to a given score value.

virtual bool IsAverageable() const =0

return "true" if scores could be averaged

vector< TScore > TScoreVector

virtual const CRgbaColor & GetColorForNoScore(IScoringMethod::EColorType type) const =0

Call for display colors when CanCalculateScores returns false.

virtual int GetType() const =0

returns combination of EAlignType flags defining types of alignments that can be colored with this me...

static const Colors colors

Include a standard set of the NCBI C++ Toolkit most basic headers.

static const char * column

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_GUIWIDGETS_ALNSCORE_EXPORT

where boath are integers</td > n< td ></td > n</tr > n< tr > n< td > tse</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> TSE option controls what blob is orig

const struct ncbi::grid::netcache::search::fields::SIZE size

#define row(bind, expected)

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