A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/simple__methods_8cpp.html below:

NCBI C++ ToolKit: src/gui/widgets/aln_score/simple_methods.cpp File Reference

Go to the source code of this file.

Go to the SVN repository for this file.

#define  SIMPLE_DESCR   "This is a column-based method that assigns scores \to residues in a column based on their representation in the column's frequency \profile. Residues that occur infrequently are highlighted darkly; columns \that contain any degree of mismatch will alsobe highlighted."   #define  SNP_DESCR   "This method highlights differences observed from the master \sequence in an alignment. In order to see any coloration with this scheme, \you must select a master sequence. You can adjust the master sequence \on the fly and display differences by selecting a new master from the context menu.";   ◆ SIMPLE_DESCR #define SIMPLE_DESCR   "This is a column-based method that assigns scores \to residues in a column based on their representation in the column's frequency \profile. Residues that occur infrequently are highlighted darkly; columns \that contain any degree of mismatch will alsobe highlighted."

Definition at line 213 of file simple_methods.cpp.

◆ SNP_DESCR #define SNP_DESCR   "This method highlights differences observed from the master \sequence in an alignment. In order to see any coloration with this scheme, \you must select a master sequence. You can adjust the master sequence \on the fly and display differences by selecting a new master from the context menu.";

Definition at line 449 of file simple_methods.cpp.

◆ s_CompareBases() static bool s_CompareBases ( char  consensus, char  base  ) static ◆ s_CompareResidues() static bool s_CompareResidues ( char  consensus, char  residue  ) static ◆ CNONSYNONYMOUS_METHOD_DESCR Initial value:

= R"foo(All triplets with nonsynonymous substitutions are colored in red.

Note: nonsynonymous substitution coloring is available only for CDS alignments.

Any sequence in alignment or pre-calculated consensus with only ACGT letters can be set as a master.)foo"

Definition at line 812 of file simple_methods.cpp.

Referenced by CNonSynonymousScoringMethod::GetDescription().

◆ kDefGradientSize ◆ kSameBase const float kSameBase = 1.0f static ◆ kSNP ◆ kUndef const float kUndef = -1.0f static

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4