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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/si2csi__task_2fetch_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/pubseq_gateway/cassandra/si2csi_task/fetch.cpp Source File

56 const string

& keyspace,

62

, m_ConsumeCallback(consume_callback)

74 "CCassSI2CSITaskFetch: DataReadyCB can't be assigned after the loading process has started"

);

81 static const string s_Select

"SELECT sec_seq_id_type, accession, gi, sec_seq_state, " 82 "seq_id_type, version, writetime(accession) FROM "

;

83 static const string

s_Where_1 =

".SI2CSI WHERE sec_seq_id = ?"

;

84 static const string

s_Where_2 = s_Where_1 +

" AND sec_seq_id_type = ?"

;

88 sql

.append(s_Where_2);

93 sql

.append(s_Where_1);

101 bool

restarted{

false

};

132

.SetSecSeqIdType(sec_seqid_type)

148

}

else if

(restarted) {

161

snprintf(

msg

sizeof

(

msg

"Failed to fetch canonical seq id (key=%s|%s|%d) unexpected state (%d)"

162

keyspace.c_str(), sec_seqid.c_str(),

#define BEGIN_IDBLOB_SCOPE

function< void(CRequestStatus::ECode status, int code, EDiagSev severity, const string &message)> TDataErrorCallback

atomic< int32_t > m_State

string GetKeySpace() const

void SetDataReadyCB3(shared_ptr< CCassDataCallbackReceiver > datareadycb3)

TCassConsistency GetReadConsistency() const

void SetupQueryCB3(shared_ptr< CCassQuery > &query)

bool CheckReady(shared_ptr< CCassQuery > qry, unsigned int restart_counter, bool &need_repeat)

vector< SQueryRec > m_QueryArr

shared_ptr< CCassQuery > ProduceQuery() const

void Error(CRequestStatus::ECode status, int code, EDiagSev severity, const string &message)

TSI2CSIConsumeCallback m_ConsumeCallback

unsigned int m_RestartCounter

void SetDataReadyCB(shared_ptr< CCassDataCallbackReceiver > callback)

vector< CSI2CSIRecord > m_Records

void SetConsumeCallback(TSI2CSIConsumeCallback callback)

CSi2CsiFetchRequest m_Request

CSI2CSIRecord::TSecSeqIdType GetSecSeqIdType() const

CSI2CSIRecord::TSecSeqId GetSecSeqId() const

bool HasField(EFields field) const

@ eDiag_Error

Error message.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_SCOPE(ns)

Define a new scope.

static EIO_Status s_Select(size_t n, SSOCK_Poll polls[], const struct timeval *tv, int asis)

function< void(vector< CSI2CSIRecord > &&)> TSI2CSIConsumeCallback

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

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