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NCBI C++ ToolKit: src/app/cn3d/show_hide_manager.cpp Source File

116

oss <<

" d"

<< labelNum;

122 bool

isVisible =

false

;

162

ChemicalGraph::MoleculeMap::const_iterator m, me =

object

->graph->molecules.end();

164 if

(m->second->IsProtein() || m->second->IsNucleotide())

178 if

(!entity || !(

object

|| molecule || residue)) {

179 ERRORMSG

(

"ShowHideManager::Show() - must be a StructureObject, Molecule, or Residue"

);

202 if

(!entity || !

IsHidden

(entity))

return

;

220 if

(

object

&& !hObj)

223 if

(molecule && hObj != h->first && !hMol)

226 if

(entity == h->first ||

227

(

object

&& hObj ==

object

) ||

228

(molecule && hMol == molecule))

230

EntitiesHidden::iterator d(h);

255 else if

((molecule =

dynamic_cast<const Molecule

>

(entity)) !=

NULL

) {

261 else if

((residue =

dynamic_cast<const Residue

>

(entity)) !=

NULL

) {

269 ERRORMSG

(

"ShowHideManager::IsHidden() - must be a StructureObject, Molecule, or Residue"

);

276 int

objectIndex, moleculeIndex;

278

StructureSet::ObjectList::const_iterator o, oe = structureSet->

objects

.end();

279 for

(o=structureSet->

objects

.begin(); o!=oe; ++o) {

285

ChemicalGraph::MoleculeMap::const_iterator m, me = (*o)->graph->molecules.end();

286 for

(m=(*o)->graph->molecules.begin(); m!=me; ++m) {

289 if

(m->second->IsProtein() || m->second->IsNucleotide()) {

292 info

->parentIndexes.push_back(objectIndex);

296 if

(m->second->nDomains >= 1) {

297

StructureObject::DomainMap::const_iterator d, de = (*o)->domainMap.end();

298 for

(d=(*o)->domainMap.begin(); d!=de; ++d) {

299 if

(d->second == m->second) {

301 info

->parentIndexes.push_back(objectIndex);

302 info

->parentIndexes.push_back(moleculeIndex);

313

vector < string > *

names

, vector < bool > *visibilities)

const 326 ERRORMSG

(

"ShowHideManager::ShowHideCallbackFunction() - wrong size list"

);

330 for

(

unsigned int i

=0;

<itemsEnabled.size(); ++

)

336 const

vector < bool >& original, vector < bool >& itemsEnabled)

339 unsigned int i

, nChanges = 0, itemChanged = 0, nEnabled = 0, itemEnabled = 0;

340 for

(

=0;

<itemsEnabled.size(); ++

) {

341 if

(itemsEnabled[

] != original[

]) {

345 if

(itemsEnabled[

]) {

352 bool

anyChange =

false

;

353 if

(nChanges == 1 || nEnabled == 1) {

354 int

item = (nChanges == 1) ? itemChanged : itemEnabled;

356 for

(

unsigned int

j=0; j<

structureInfo

[

]->parentIndexes.size(); ++j) {

358 if

(itemsEnabled[

] != itemsEnabled[item]) {

359

itemsEnabled[

] = itemsEnabled[item];

368 for

(

=0;

<itemsEnabled.size(); ++

) {

369 if

(itemsEnabled[

]) {

370 for

(

unsigned int

j=0; j<

structureInfo

[

]->parentIndexes.size(); ++j) {

390

StructureSet::ObjectList::const_iterator o, oe =

set

->objects.

end

();

391 for

(o=

set

->objects.

begin

(); o!=oe; ++o) {

392

ChemicalGraph::MoleculeMap::const_iterator m, me = (*o)->graph->molecules.end();

393 for

(m=(*o)->graph->molecules.begin(); m!=me; ++m) {

395 if

(m->second->IsNucleotide()) {

396 Show

(m->second,

false

);

400 if

(!m->second->IsProtein())

continue

;

402 if

set

->alignmentManager->IsInAlignment(m->second->sequence)) {

403 Show

(m->second,

false

);

408

Molecule::ResidueMap::const_iterator

, re = m->second->residues.end();

411 for

(

=m->second->residues.begin();

!=re; ++

)

412 if

(

set

->alignmentManager->IsAligned(m->second->sequence,

->first - 1))

413

domains[m->second->residueDomains[

->first - 1]] =

true

;

416 for

(

=m->second->residues.begin();

!=re; ++

)

417 if

(domains.

find

(m->second->residueDomains[

->first - 1]) == domains.

end

())

418 Show

(

->second,

false

);

426

StructureSet::ObjectList::const_iterator o, oe =

set

->objects.

end

();

427 for

(o=

set

->objects.

begin

(); o!=oe; ++o) {

428

ChemicalGraph::MoleculeMap::const_iterator m, me = (*o)->graph->molecules.end();

429 for

(m=(*o)->graph->molecules.begin(); m!=me; ++m) {

431 if

(!(m->second->IsProtein() || m->second->IsNucleotide()))

434 if

(!(

set

->alignmentManager->IsInAlignment(m->second->sequence) ||

set

->styleManager->MoleculeHasUserStyle(*o, m->second->id))) {

435 Show

(m->second,

false

);

440

Molecule::ResidueMap::const_iterator

, re = m->second->residues.end();

443 for

(

=m->second->residues.begin();

!=re; ++

)

444 if

(

set

->alignmentManager->IsAligned(m->second->sequence,

->first - 1) ||

set

->styleManager->ResidueHasUserStyle(*o, m->second->id,

->first))

445

domains[m->second->residueDomains[

->first - 1]] =

true

;

448 for

(

=m->second->residues.begin();

!=re; ++

)

449 if

(domains.

find

(m->second->residueDomains[

->first - 1]) == domains.

end

())

450 Show

(

->second,

false

);

458

StructureSet::ObjectList::const_iterator o, oe =

set

->objects.

end

();

459 for

(o=

set

->objects.

begin

(); o!=oe; ++o) {

460

ChemicalGraph::MoleculeMap::const_iterator m, me = (*o)->graph->molecules.end();

461 for

(m=(*o)->graph->molecules.begin(); m!=me; ++m) {

464 if

(m->second->IsNucleotide() ||

465

(m->second->IsProtein() && !

set

->alignmentManager->IsInAlignment(m->second->sequence)))

467 Show

(m->second,

false

);

475

StructureSet::ObjectList::const_iterator o, oe =

set

->objects.

end

();

476 for

(o=

set

->objects.

begin

(); o!=oe; ++o) {

477

ChemicalGraph::MoleculeMap::const_iterator m, me = (*o)->graph->molecules.end();

478 for

(m=(*o)->graph->molecules.begin(); m!=me; ++m) {

480 if

(m->second->IsNucleotide()) {

481 Show

(m->second,

false

);

484 if

(!m->second->IsProtein())

continue

;

486 if

set

->alignmentManager->IsInAlignment(m->second->sequence)) {

487 if

(showAligned)

Show

(m->second,

false

);

491

Molecule::ResidueMap::const_iterator

, re = m->second->residues.end();

492 for

(

=m->second->residues.begin();

!=re; ++

) {

493 bool

aligned =

set

->alignmentManager->IsAligned(m->second->sequence,

->first - 1);

494 if

((showAligned && !aligned) || (!showAligned && aligned))

495 Show

(

->second,

false

);

518

StructureSet::ObjectList::const_iterator o, oe =

set

->objects.

end

();

519 for

(o=

set

->objects.

begin

(); o!=oe; ++o) {

520 bool

anyResidueInObjectVisible =

false

;

521

ChemicalGraph::MoleculeMap::const_iterator m, me = (*o)->graph->molecules.end();

522 for

(m=(*o)->graph->molecules.begin(); m!=me; ++m) {

523

Molecule::ResidueMap::const_iterator

, re = m->second->residues.end();

524 bool

anyResidueInMoleculeVisible =

false

;

525 for

(

=m->second->residues.begin();

!=re; ++

) {

527 Show

(

->second,

false

);

529

anyResidueInMoleculeVisible = anyResidueInObjectVisible =

true

;

531 if

(!anyResidueInMoleculeVisible) {

532 for

(

=m->second->residues.begin();

!=re; ++

)

533 Show

(

->second,

true

);

534 Show

(m->second,

false

);

537 if

(!anyResidueInObjectVisible) {

538 for

(m=(*o)->graph->molecules.begin(); m!=me; ++m)

539 Show

(m->second,

true

);

553

StructureSet::ObjectList::const_iterator o, oe =

set

->objects.

end

();

554 for

(o=

set

->objects.

begin

(); o!=oe; ++o) {

555

ChemicalGraph::MoleculeMap::const_iterator m, me = (*o)->graph->molecules.end();

556 for

(m=(*o)->graph->molecules.begin(); m!=me; ++m) {

557

Molecule::ResidueMap::const_iterator

, re = m->second->residues.end();

562 for

(

=m->second->residues.begin();

!=re; ++

) {

564

domain = m->second->residueDomains[

->first - 1];

566

domains[domain] =

true

;

571 for

(

=m->second->residues.begin();

!=re; ++

) {

572

domain = m->second->residueDomains[

->first - 1];

574 Show

(

->second,

true

);

CNcbiOstrstreamToString class helps convert CNcbiOstrstream to a string Sample usage:

void PostRedrawMolecule(const Molecule *molecule)

void PostRedrawAllSequenceViewers(void)

std::vector< int > residueDomains

static const int NO_DOMAIN_SET

const MoleculeIdentifier * identifier

unsigned int NResidues(void) const

virtual ~ShowHideDomain(void)

void Show(ShowHideManager *shm, bool isShown) const

bool IsVisible(const ShowHideManager *shm) const

const Molecule * molecule

ShowHideDomain(const Molecule *m, int d, int labelNum)

virtual void Show(ShowHideManager *shm, bool isShown) const =0

virtual bool IsVisible(const ShowHideManager *shm) const =0

void GetLabel(string *str) const

vector< int > parentIndexes

virtual ~ShowHideInfo(void)

void ShowDomainsWithHighlights(const StructureSet *set)

std::vector< const ShowHideInfo * > structureInfo

void ShowSelectedResidues(const StructureSet *set)

void ShowResidues(const StructureSet *set, bool showAligned)

void ShowHideCallbackFunction(const std::vector< bool > &itemsEnabled)

void ConstructShowHideArray(const StructureSet *structureSet)

void UnHideEntityAndChildren(const StructureBase *entity)

void Show(const StructureBase *entity, bool isShown)

bool IsHidden(const StructureBase *entity) const

EntitiesHidden entitiesHidden

void ShowAlignedDomains(const StructureSet *set)

void ShowAlignedOrAnnotatedDomains(const StructureSet *set)

void PrivateShowResidues(const StructureSet *set, bool showAligned)

virtual ~ShowHideManager()

bool SelectionChangedCallback(const std::vector< bool > &original, std::vector< bool > &itemsEnabled)

void MakeAllVisible(void)

void ShowAlignedChains(const StructureSet *set)

void ShowUnalignedResiduesInAlignedDomains(const StructureSet *set)

bool IsVisible(const StructureBase *entity) const

void GetShowHideInfo(std::vector< std::string > *names, std::vector< bool > *visibilities) const

ShowHideMolecule(const Molecule *m)

const Molecule * molecule

void Show(ShowHideManager *shm, bool isShown) const

bool IsVisible(const ShowHideManager *shm) const

virtual ~ShowHideMolecule(void)

void Show(ShowHideManager *shm, bool isShown) const

virtual ~ShowHideObject(void)

ShowHideObject(const StructureObject *o)

const StructureObject * object

bool IsVisible(const ShowHideManager *shm) const

bool GetParentOfType(const T **ptr, bool warnIfNotFound=true) const

std::string GetPDBID(char separator='_') const

const ChemicalGraph * graph

OpenGLRenderer * renderer

const_iterator end() const

const_iterator find(const key_type &key) const

const_iterator begin() const

const_iterator end() const

Include a standard set of the NCBI C++ Toolkit most basic headers.

static const struct name_t names[]

static const char * str(char *buf, int n)

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_SCOPE(ns)

Define a new scope.

static const char label[]

Messenger * GlobalMessenger(void)

NCBI C++ stream class wrappers for triggering between "new" and "old" C++ stream libraries.

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

static void PostRedrawEntity(const StructureObject *object, const Molecule *molecule, const Residue *residue)

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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/show__hide__manager_8cpp_source.html below:

NCBI C++ ToolKit: src/app/cn3d/show_hide_manager.cpp Source File

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/showhidemanager_8cpp_source.html below: