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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/settings_8cpp_source.html below:

NCBI C++ ToolKit: src/app/pubseq_gateway/server/settings.cpp Source File

121 const string kDefaultSSLCiphers

"EECDH+aRSA+AESGCM EDH+aRSA+AESGCM EECDH+aRSA EDH+aRSA !SHA !SHA256 !SHA384"

;

146 const string kDefaultMyNCBIURL

"http://txproxy.linkerd.ncbi.nlm.nih.gov/v1/service/MyNCBIAccount?txsvc=MyNCBIAccount"

;

152 const string kDefaultMyNCBITestWebCubbyUser

"MVWNUIMYDR41F2XRDBT8JTFGDFFR9KJM;logged-in=true;my-name=vakatov@ncbi.nlm.nih.gov;persistent=true@E7321B44700304B1_0000SID"

;

173

m_ShutdownIfTooManyOpenFD(0),

282 "]/port value is not found in the configuration " 283 "file. The port must be provided to run the server. " 307 "maxconnalertlimit"

330 "conn_throttle_threshold"

335 "conn_throttle_by_host"

340 "conn_throttle_by_site"

345 "conn_throttle_by_process"

350 "conn_throttle_by_user_agent"

362 "send_blob_if_small"

371 "ProcessorMaxConcurrency"

374 "split_info_blob_cache_size"

404 "only_for_processor"

412 "dbfile_si2csi"

""

);

414 "dbfile_bioseq_info"

""

);

416 "dbfile_blob_prop"

""

);

471 "critical_data_sources"

500 m_Warnings

.push_back(

"The [HEALTH]/critical_data_sources value " 501 "has NONE together with other items. " 502 "The NONE item is ignored."

);

510 "The [HEALTH]/timeout value is out of range. It must be > 0. " 537 "The [CASSANDRA]/health_timeout value is out of range. It must be >= 0. " 565 "The LMDB health timeout is out of range. It must be >= 0. " 592 "The CDD health timeout is out of range. It must be >= 0. " 619 "The WGS health timeout is out of range. It must be >= 0. " 621 "default from [HEALTH]/timeout: "

647 "The SNP health timeout is out of range. It must be >= 0. " 649 "default from [HEALTH]/timeout: "

662 "not_found_cache_size"

671 "error_cache_back_off_ms"

683 "resolve_timeout_ms"

686 "dns_resolve_ok_period_sec"

689 "dns_resolve_fail_period_sec"

692 "test_web_cubby_user"

695 "test_ok_period_sec"

698 "test_fail_period_sec"

708 for

(

const auto

& value_id :

entries

) {

719

name_and_description +

720 " information. Expected <name>:::<description"

);

733 "Decrypting error detected while reading " 742 "Unknown decrypting error detected while reading " 799 string

combined_critical_errors;

801 if

(!combined_critical_errors.empty()) {

802

combined_critical_errors +=

"\n"

;

804

combined_critical_errors +=

"- "

+ item;

806

combined_msg =

"The following critical errors were found " 807 "while reading settings:\n"

+ combined_critical_errors;

812 string

combined_errors;

813 for

(

const string

& item :

m_Errors

) {

814 if

(!combined_errors.empty()) {

815

combined_errors +=

"\n"

;

817

combined_errors +=

"- "

+ item;

819 string

errors =

"The following errors were found " 820 "while reading settings:\n"

+ combined_errors;

823 if

(!combined_msg.empty()) {

824

combined_msg +=

"\n"

;

826

combined_msg += errors;

830 string

combined_warnings;

832 if

(!combined_warnings.empty()) {

833

combined_warnings +=

"\n"

;

835

combined_warnings +=

"- "

+ item;

837 string

warns =

"The following warnings were found " 838 "while reading settings:\n"

+ combined_warnings;

841 if

(!combined_msg.empty()) {

842

combined_msg +=

"\n"

;

844

combined_msg += warns;

847 if

(!combined_msg.empty()) {

865 if

(m_HttpPort < kHttpPortMin || m_HttpPort >

kHttpPortMax

) {

868 "]/port value is out of range. Allowed range: "

874 if

(m_HttpWorkers < kWorkersMin || m_HttpWorkers >

kWorkersMax

) {

876 "The number of HTTP workers is out of range. Allowed " 887 "The listener backlog is out of range. Allowed " 896 m_CriticalErrors

.push_back(

"Invalid [SERVER]/conn_throttle_close_idle value. " 897 "It must be >= 0. Resetting to "

903 m_CriticalErrors

.push_back(

"Invalid [SERVER]/conn_force_close_wait value. " 904 "It must be >= 0. Resetting to "

910 m_CriticalErrors

.push_back(

"Invalid [SERVER]/conn_throttle_data_valid value. " 911 "It must be > 0. Resetting to "

916 bool

connection_config_good =

true

;

917 if

(m_TcpMaxConn < kTcpMaxConnMin || m_TcpMaxConn >

kTcpMaxConnMax

) {

918

connection_config_good =

false

;

920 "The max number of connections is out of range. Allowed " 924 ". Resetting all connection and throttling settings to default."

);

929

connection_config_good =

false

;

931 "Invalid [SERVER]/maxconnsoftlimit value. It must be > 0. " 932 "Resetting all connection and throttling settings to default."

);

937

connection_config_good =

false

;

939 "Inconsistent [SERVER]/maxconn value. " 940 "It must be >= [SERVER]/maxconnsoftlimit value. " 941 "Resetting all connection and throttling settings to default."

);

946

connection_config_good =

false

;

948 "Invalid [SERVER]/maxconnalertlimit value. " 950 "Resetting all connection and throttling settings to default."

);

955

connection_config_good =

false

;

957 "Inconsistent [SERVER]/maxconnalertlimit value. " 958 "It must be <= [SERVER]/maxconnsoftlimit value. " 959 "Resetting all connection and throttling settings to default."

);

963 if

(connection_config_good &&

965

connection_config_good =

false

;

967 "Inconsistent [SERVER]/conn_throttle_threshold value. It must be " 968 "<= [SERVER]/maxconnsoftlimit value. " 969 "Resetting all connection and throttling settings to default."

);

974

connection_config_good =

false

;

976 "Inconsistent [SERVER]/conn_throttle_by_host value. It must be " 977 "<= [SERVER]/conn_throttle_threshold value. " 978 "Resetting all connection and throttling settings to default."

);

983

connection_config_good =

false

;

985 "Inconsistent [SERVER]/conn_throttle_by_site value. It must be " 986 "<= [SERVER]/conn_throttle_threshold value. " 987 "Resetting all connection and throttling settings to default."

);

992

connection_config_good =

false

;

994 "Inconsistent [SERVER]/conn_throttle_by_process value. It must be " 995 "<= [SERVER]/conn_throttle_threshold value. " 996 "Resetting all connection and throttling settings to default."

);

1001

connection_config_good =

false

;

1003 "Inconsistent [SERVER]/conn_throttle_by_user_agent value. It must be " 1004 "<= [SERVER]/conn_throttle_threshold value. " 1005 "Resetting all connection and throttling settings to default."

);

1013 "The http max backlog must be > 0. Resetting to "

1022 "The http max running must be > 0. Resetting to "

1031 "The log sampling ratio must be >= 0. Resetting to "

1040 "The log timing threshold must be >= 0. Resetting to "

1049 "The max hops must be > 0. Resetting to "

1058 "The resend timeout must be >= 0. Resetting to "

1067 "The request timeout must be > 0. Resetting to "

1075 "]/ProcessorMaxConcurrency value ("

1077 "The processor max concurrency must be > 0. " 1086 bool

stat_settings_good =

true

;

1092 "'. Allowed values are: log, linear. " 1093 "The statistics parameters are reset to default values."

);

1094

stat_settings_good =

false

;

1102 if

(stat_settings_good) {

1106 "]/min and max values. The " 1107 "max cannot be less than min. " 1108 "The statistics parameters are reset to default values."

);

1109

stat_settings_good =

false

;

1118 if

(stat_settings_good) {

1122 "]/n_bins value. The " 1123 "number of bins must be > 0. " 1124 "The statistics parameters are reset to default values."

);

1140 "The tick span must be > 0. Resetting to "

1151 "in the ini file. No si2csi cache will be used."

);

1157 "in the ini file. No bioseq_info cache will be used."

);

1163 "in the ini file. No blob_prop cache will be used."

);

1171 "The max exclude cache size must be a positive integer. " 1173 "Resetting to 0 (exclude blobs cache is disabled)"

);

1177 if

(m_ExcludeCachePurgePercentage < 0 || m_ExcludeCachePurgePercentage > 100) {

1178 string msg

"The exclude cache purge percentage is out of range. " 1179 "Allowed: 0...100. Received: "

1185 m_Warnings

.push_back(

msg

"The provided value has no effect " 1186 "because the exclude cache is disabled."

);

1192 string msg

"The exclude cache inactivity purge timeout must be > 0." 1199 m_Warnings

.push_back(

msg

"The provided value has no effect " 1200 "because the exclude cache is disabled."

);

1213 "The ["

kIPGSection

"]/page_size value must be > 0. " 1227 "["

kSSLSection

"]/ssl_cert_file value must be provided " 1228 "if ["

kSSLSection

"]/ssl_enable is set to true"

);

1232 "["

kSSLSection

"]/ssl_key_file value must be provided " 1233 "if ["

kSSLSection

"]/ssl_enable is set to true"

);

1238 "["

kSSLSection

"]/ssl_cert_file is not found"

);

1242 "["

kSSLSection

"]/ssl_key_file is not found"

);

1287 "The ["

kMyNCBISection

"]/resolve_timeout_ms value must be > 0. " 1305 const string

& section,

1306 const string

& entry,

1307 double

default_value)

1311 if

(reg_value.empty()) {

1312 return

default_value;

1315 if

(reg_value.back() !=

'%'

) {

1318 "The ["

+ section +

"]/"

+ entry +

" value is malformed. " 1319 "The '%' character must be at the end. " 1320 "Resetting to "

+ to_string(default_value));

1321 return

default_value;

1325

reg_value.back() =

' '

;

1328 if

(reg_value.empty()) {

1331 "The ["

+ section +

"]/"

+ entry +

" value is malformed. " 1332 "There is no actual value in front of the '%' character. " 1333 "Resetting to "

+ to_string(default_value));

1334 return

default_value;

1339 double val

= stod(reg_value);

1342 "The ["

+ section +

"]/"

+ entry +

" value is invalid. It must be > 0. " 1343 "Resetting to "

+ to_string(default_value));

1344 return

default_value;

1352 "The ["

+ section +

"]/"

+ entry +

" value is malformed. " 1353 "Error converting it to double. " 1354 "Resetting to "

+ to_string(default_value));

1355 return

default_value;

1363 const string

& section,

1364 const string

& entry)

1368 if

(reg_value.empty()) {

1372 return

reg_value.back() ==

'%'

;

1391 const string

& section,

1392 const string

& entry,

1393 unsigned long

default_val)

1411 const string

& processor_id)

1413 string

section = processor_id +

"_PROCESSOR"

;

1417 "ProcessorMaxConcurrency"

1421 "Invalid ["

+ section +

"]/ProcessorMaxConcurrency value ("

1422

to_string(limit) +

"). " 1423 "The processor max concurrency must be > 0. "

void transform(Container &c, UnaryFunction *op)

void Register(EPSGS_AlertType alert_type, const string &message)

definition of a Culling tree

@ eNoOwnership

No ownership is assumed.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

const TParamTree * GetTree() const

Uint8 GetDataSize(const string &driver_name, const string &param_name, EErrAction on_error, unsigned int default_value, const list< string > *synonyms=NULL)

Utility function to get an integer element of parameter tree Throws an exception when mandatory param...

@ eErr_NoThrow

Return default value on error.

virtual bool GetBool(const string &section, const string &name, bool default_value, TFlags flags=0, EErrAction err_action=eThrow) const

Get boolean value of specified parameter name.

virtual const string & Get(const string &section, const string &name, TFlags flags=0) const

Get the parameter value.

virtual int GetInt(const string &section, const string &name, int default_value, TFlags flags=0, EErrAction err_action=eThrow) const

Get integer value of specified parameter name.

virtual double GetDouble(const string &section, const string &name, double default_value, TFlags flags=0, EErrAction err_action=eThrow) const

Get double value of specified parameter name.

virtual bool HasEntry(const string &section, const string &name=kEmptyStr, TFlags flags=0) const

virtual void EnumerateEntries(const string &section, list< string > *entries, TFlags flags=fAllLayers) const

Enumerate parameter names for a specified section.

string GetEncryptedString(const string &section, const string &name, TFlags flags=0, const string &password=kEmptyStr) const

Get a value that was (potentially) stored encrypted.

virtual string GetString(const string &section, const string &name, const string &default_value, TFlags flags=0) const

Get the parameter string value.

static int CompareNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive compare of a substring with another string.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static bool SplitInTwo(const CTempString str, const CTempString delim, string &str1, string &str2, TSplitFlags flags=0)

Split a string into two pieces using the specified delimiters.

static string TruncateSpaces(const string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string.

@ fSplit_MergeDelimiters

Merge adjacent delimiters.

@ fSplit_ByPattern

Require full delimiter strings.

const TTreeType * FindSubNode(const TKeyType &key) const

Non recursive linear scan of all subnodes, with key comparison.

constexpr auto sort(_Init &&init)

Parameters initialization model.

Plugin manager (using class factory paradigm).

#define PSG_ERROR(message)

#define PSG_CRITICAL(message)

#define PSG_WARNING(message)

const string kAutoExcludeSection

const size_t kDefaultLogTimingThreshold

const string kDefaultAuthToken

const size_t kDefaultShutdownIfTooManyOpenFDforHTTPS

const size_t kDefaultHttpMaxBacklog

const string kHealthSection

const size_t kDefaultIPGPageSize

const unsigned int kDefaultMaxHops

const unsigned long kDefaultSendBlobIfSmall

const bool kDefaultSSLEnable

const unsigned short kTcpMaxConnMin

const bool kDefaultAllowProcessorTiming

const int64_t kTcpConnHardSoftDiffDefault

const double kDefaultLMDBHealthTimeoutSec

const string kDefaultCDDProcessorHealthCommand

const string kWGSProcessorSection

const string kDefaultSSLKeyFile

const string kDefaultOnlyForProcessor

const int64_t kTcpMaxConnDefault

const size_t kDefaultMyNCBITestFailPeriodSec

const string kDefaultSSLCertFile

const string kServerSection

const size_t kDefaultHttpMaxRunning

const double kDefaultConnThrottleByHostPercent

const string kCassandraProcessorSection

const string kCDDProcessorSection

const bool kDefaultLogPeerIPAlways

const unsigned short kHttpPortMax

const double kDefaultTcpMaxConnAlertLimitPercent

const double kDefaultConnThrottleByProcessPercent

const bool kDefaultCassandraProcessorsEnabled

const unsigned short kWorkersDefault

const bool kDefaultSNPProcessorsEnabled

const string kDefaultConfigurationDomain

const size_t kDefaultConnThrottleByHost

const double kDefaultConnThrottleByUserAgentPercent

const int64_t kTcpMaxConnSoftLimitDefault

const size_t kDefaultConnThrottleThreshold

const size_t kDefaultMyNCBINotFoundCacheExpirationSec

const string kDebugSection

const unsigned int kListenerBacklogDefault

const bool kDefaultSeqIdResolveAlways

const double kDefaultRequestTimeoutSec

const string kCountersSection

const size_t kDefaultSplitInfoBlobCacheSize

const size_t kDefaultMyNCBIDnsResolveOkPeriodSec

const size_t kDefaultConnThrottleByProcess

const string kDefaultSNPProcessorHealthCommand

const size_t kDefaultMyNCBIErrorCacheSize

const size_t kDefaultMyNCBIOKCacheSize

const string kDefaultRootKeyspace

const size_t kDefaultLogSamplingRatio

const double kDefaultCassandraHealthTimeoutSec

const size_t kDefaultProcessorMaxConcurrency

const unsigned short kTcpMaxConnMax

const string kDefaultCriticalDataSources

const double kDefaultSNPHealthTimeoutSec

const int64_t kTcpMaxConnAlertLimitDefault

const size_t kDefaultMyNCBIResolveTimeoutMs

const unsigned long kDefaultSmallBlobSize

const unsigned short kHttpPortMin

const size_t kDefaultIdleTimeoutSec

const size_t kDefaultShutdownIfTooManyOpenFDforHTTP

const unsigned int kListenerBacklogMax

const unsigned int kDefaultExcludeCachePurgePercentage

const unsigned short kWorkersMax

const size_t kDefaultConnThrottleBySite

const unsigned short kWorkersMin

const int64_t kTcpConnSoftAlertDiffDefault

const string kMyNCBISection

const unsigned int kDefaultExcludeCacheMaxSize

const string kLMDBProcessorSection

const size_t kDefaultMyNCBIErrorCacheBackOffMs

const string kLmdbCacheSection

const string kSNPProcessorSection

const size_t kDefaultMyNCBITestOkPeriodSec

const string kDefaultMyNCBITestWebCubbyUser

const bool kDefaultCDDProcessorsEnabled

const bool kDefaultAllowIOTest

const size_t kDefaultConnThrottleByUserAgent

const bool kDefaultLmdbReadAhead

const double kDefaultWGSHealthTimeoutSec

const double kDefaultConnThrottleThresholdPercent

const double kDefaultTcpMaxConnSoftLimitPercent

const double kDefaultConnThrottleCloseIdleSec

const double kDefaultHealthTimeout

const string kDefaultSSLCiphers

const string kDefaultLMDBProcessorHealthCommand

const double kDefaultConnForceCloseWaitSec

const string kDefaultCassandraProcessorHealthCommand

const string kDefaultAuthCommands

const size_t kDefaultMyNCBINotFoundCacheSize

const size_t kDefaultMyNCBIDnsResolveFailPeriodSec

const double kDefaultResendTimeoutSec

const double kDefaultConnThrottleBySitePercent

const string kDefaultMyNCBIURL

const bool kDefaultWGSProcessorsEnabled

const string kDefaultMyNCBIHttpProxy

const string kAdminSection

const bool kDefaultEnableHugeIPG

const size_t kDefaultMyNCBITimeoutMs

const string kDefaultWGSProcessorHealthCommand

const unsigned int kDefaultExcludeCacheInactivityPurge

const string kStatisticsSection

const double kDefaultCDDHealthTimeoutSec

const double kDefaultThrottlingDataValidSec

const unsigned int kListenerBacklogMin

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

void x_ValidateAdminSection(void)

void x_ValidateCassandraProcessorSection(void)

void x_ValidateSSLSection(void)

void x_ValidateHealthSection(void)

bool m_SNPProcessorsEnabled

void x_ValidateLmdbCacheSection(void)

unsigned long m_MinStatValue

double m_ThrottlingDataValidSec

int64_t m_TcpMaxConnAlertLimit

double m_CassandraHealthTimeoutSec

string m_WGSProcessorHealthCommand

void x_ReadCountersSection(const CNcbiRegistry &registry)

void x_ValidateMyNCBISection(void)

size_t m_SplitInfoBlobCacheSize

double m_ResendTimeoutSec

string m_OnlyForProcessor

double x_GetPercentValue(const CNcbiRegistry &registry, const string &section, const string &entry, double default_val)

unsigned long x_GetDataSize(const CNcbiRegistry &registry, const string &section, const string &entry, unsigned long default_val)

vector< string > m_CriticalDataSources

size_t m_ConnThrottleByProcess

void x_ReadCDDProcessorSection(const CNcbiRegistry &registry)

string m_BioseqInfoDbFile

size_t m_ConnThrottleThreshold

string m_MyNCBITestWebCubbyUser

string m_SNPProcessorHealthCommand

double m_RequestTimeoutSec

size_t m_LogTimingThreshold

size_t m_MyNCBIDnsResolveFailPeriodSec

void x_ValidateLMDBProcessorSection(void)

string m_CassandraProcessorHealthCommand

map< string, tuple< string, string > > m_IdToNameAndDescription

unsigned int m_ExcludeCachePurgePercentage

double m_LMDBHealthTimeoutSec

size_t m_MyNCBITestOkPeriodSec

void x_ReadIPGSection(const CNcbiRegistry &registry)

size_t m_MyNCBINotFoundCacheSize

vector< string > m_Warnings

unsigned short m_HttpPort

bool x_IsPercentValue(const CNcbiRegistry &registry, const string &section, const string &entry)

double m_SNPHealthTimeoutSec

void x_ResetConnectionSettingsToDefault(void)

size_t m_ConnThrottleByUserAgent

void x_ReadSNPProcessorSection(const CNcbiRegistry &registry)

vector< string > m_CriticalErrors

unsigned long m_MaxStatValue

void x_ReadStatisticsSection(const CNcbiRegistry &registry)

void x_ReadWGSProcessorSection(const CNcbiRegistry &registry)

size_t m_LogSamplingRatio

size_t m_MyNCBITestFailPeriodSec

void x_ValidateCDDProcessorSection(void)

void x_ReadServerSection(const CNcbiRegistry &registry)

bool m_SeqIdResolveAlways

unsigned short m_HttpWorkers

void x_ValidateDebugSection(void)

double m_WGSHealthTimeoutSec

string m_ConfigurationDomain

void Read(const CNcbiRegistry &registry)

void x_ReadAutoExcludeSection(const CNcbiRegistry &registry)

bool IsAuthProtectedCommand(const string &cmd) const

void x_ValidateServerSection(void)

vector< string > m_Errors

size_t m_MyNCBIErrorCacheBackOffMs

void x_ValidateLogSection(void)

size_t m_MyNCBIDnsResolveOkPeriodSec

size_t m_MyNCBIOKCacheSize

void x_ValidateStatisticsSection(void)

void x_ValidateWGSProcessorSection(void)

void x_ReadMyNCBISection(const CNcbiRegistry &registry)

unsigned int m_ExcludeCacheMaxSize

void Validate(CPSGAlerts &alerts)

void x_ReadAdminSection(const CNcbiRegistry &registry)

void x_ValidateCountersSection(void)

string m_LMDBProcessorHealthCommand

void x_ValidateIPGSection(void)

unsigned long m_SmallBlobSize

size_t GetProcessorMaxConcurrency(const CNcbiRegistry &registry, const string &processor_id)

double m_ConnForceCloseWaitSec

void x_ReadSSLSection(const CNcbiRegistry &registry)

int64_t m_TcpMaxConnSoftLimit

bool m_CassandraProcessorsEnabled

size_t m_ProcessorMaxConcurrency

void x_ValidateSNPProcessorSection(void)

void x_ReadHealthSection(const CNcbiRegistry &registry)

void x_ReadH2OSection(const CNcbiRegistry &registry)

size_t m_ShutdownIfTooManyOpenFD

~SPubseqGatewaySettings()

unsigned int m_ListenerBacklog

bool m_AllowProcessorTiming

void x_ValidateH2OSection(void)

string m_CDDProcessorHealthCommand

size_t m_ConnThrottleByHost

bool m_CDDProcessorsEnabled

unsigned int m_ExcludeCacheInactivityPurge

void x_ValidateAutoExcludeSection(void)

double m_CDDHealthTimeoutSec

double m_ConnThrottleCloseIdleSec

size_t m_MyNCBINotFoundCacheExpirationSec

unsigned long m_SendBlobIfSmall

size_t m_MyNCBIErrorCacheSize

bool m_WGSProcessorsEnabled

void x_ReadLmdbCacheSection(const CNcbiRegistry &registry)

vector< string > m_AuthCommands

void x_ReadLogSection(const CNcbiRegistry &registry)

void x_ReadLMDBProcessorSection(const CNcbiRegistry &registry)

void x_ReadCassandraProcessorSection(const CNcbiRegistry &registry)

void x_ReadDebugSection(const CNcbiRegistry &registry)

unsigned long m_NStatBins

double m_HealthTimeoutSec

size_t m_MyNCBIResolveTimeoutMs

size_t m_ConnThrottleBySite

const unsigned long kNStatBins

const unsigned long kMinStatValue

const string kStatScaleType

const unsigned long kMaxStatValue

const unsigned long kTickSpan

static wxAcceleratorEntry entries[3]

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