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NCBI C++ ToolKit: src/serial/serialobject.cpp Source File

type1 =

->GetPointedType();

type2 =

->GetPointedType();

(type1 == type2);

);

(

);

+=

(*this).name();

(

(

) !=

(*

) && !

(

, *

) ) {

(

);

+=

(*this).name();

+=

(object).name();

ostr <<

;

oos->SetAutoSeparator(

);

ostr <<

;

TSerialVerifyData::ResetThreadDefault();

TSerialVerifyData::SetThreadDefault(

);

TSerialVerifyData::ResetDefault();

TSerialVerifyData::SetDefault(

);

now = TSerialVerifyData::GetDefault();

( e_pos !=

) {

capitalize =

;

c = (char)

((

)c);

( !member_name.empty() ) {

s <<

<<

->GetAccessModuleName() <<

<<

->GetAccessName() <<

;

( !member_name.empty() ) {

s <<

<< index <<

;

: m_Name(name), m_NsName(ns_name), m_Value(

)

: m_Name(other.m_Name), m_NsName(other.m_NsName), m_Value(other.m_Value)

vector<CSerialAttribInfoItem>::const_iterator it;

vector<CSerialAttribInfoItem>&

atomic<bool> s_HaveIndex;

( !s_HaveIndex.load(memory_order_acquire) ) {

( !s_HaveIndex.load(memory_order_acquire) ) {

s_SerIndex[

] = CNcbiIos::xalloc();

s_HaveIndex.store(

, memory_order_release);

io.iword(s_SerIndex[idx]);

: enc = 0;

;

: m_Index(idx), m_All(

), m_Flags(

)

ostr->Write(ptr,

);

);

istr->Read(ptr,

);

Serializable object that stores any combination of parsable data.

void SetFrame(const string &frame)

void Log(const string &name, const char *value, CDebugDumpFormatter::EValueType type=CDebugDumpFormatter::eValue, const string &comment=kEmptyStr)

CNcbiOstrstreamToString class helps convert CNcbiOstrstream to a string Sample usage:

XML attribute information item.

Root class for all serialization exceptions.

Base class for all serializable objects.

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

CTypeInfo class contains all information about C++ types (both basic and classes): members and layout...

Thrown on an attempt to write unassigned data member.

static unsigned char depth[2 *(256+1+29)+1]

std::ofstream out("events_result.xml")

main entry point for tests

static const char * str(char *buf, int n)

#define ERR_POST_XX_ONCE(error_name, err_subcode, message)

Error posting only once during program execution with given error code name and given error subcode.

#define ERR_POST_X(err_subcode, message)

Error posting with default error code and given error subcode.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

void Warning(CExceptionArgs_Base &args)

const CMemberId & GetId(void) const

const string & GetName(void) const

const CItemInfo * GetItemInfo(TMemberIndex index) const

static TMemberIndex FirstIndex(void)

TMemberIndex LastIndex(void) const

ESerialRecursionMode

How to assign and compare child sub-objects of serial objects.

CAnyContentObject & operator=(const CAnyContentObject &other)

unsigned int TSerial_Json_Flags

virtual ~CAnyContentObject(void)

static bool HasSerialFormatting(CNcbiIos &io)

virtual void DebugDump(CDebugDumpContext ddc, unsigned int depth) const

Define method for dumping debug information.

MSerial_SkipUnknownMembers(ESerialSkipUnknown fmt)

static const CTypeInfo * GetTypeInfo(void)

bool operator==(const CAnyContentObject &other) const

ESerialSkipUnknown

Skip unknown members parameters.

static void SetVerifyDataGlobal(ESerialVerifyData verify)

EFixNonPrint

How to process non-printing character in the ASN VisibleString.

CNcbiIstream & operator>>(CNcbiIstream &is, CSerialObject &obj)

const CStringUTF8 & GetValue(void) const

Get normalized value.

unsigned int TSerial_AsnText_Flags

const CStringUTF8 & GetValue(void) const

Get normalized value of the information item.

size_t TMemberIndex

Type used for indexing class members and choice variants.

static ESerialVerifyData x_GetVerifyData(void)

const string & GetNamespaceName(void) const

Get namespace name.

MSerial_Format(ESerialDataFormat fmt, TSerial_Format_Flags flags=0)

ESerialVerifyData

Data verification parameters.

CNcbiIstream & ReadObject(CNcbiIstream &is, TObjectPtr ptr, TTypeInfo info)

const void * TConstObjectPtr

CNcbiOstream & WriteObject(CNcbiOstream &os, TConstObjectPtr ptr, TTypeInfo info)

static const char ms_UnassignedByte

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

#define SERIAL_VERIFY_DATA_GET

void SetFlags(CNcbiIos &io) const

CNcbiIos & MSerial_VerifyNo(CNcbiIos &io)

void ThrowUnassigned(TMemberIndex index) const

const string & GetNamespaceName(void) const

Get namespace name of the information item.

CNcbiIos & MSerial_None(CNcbiIos &io)

Reset all formatting flags for the I/O stream.

void SetName(const string &name)

Set local name.

MSerial_Format & operator()(TSerial_Json_Flags flags)

void AddAttribute(const string &name, const string &ns_name, const CStringUTF8 &value)

Add attribute.

MSerial_Format & operator()(TSerial_AsnText_Flags flags)

const string & GetNamespaceName(void) const

Get namespace name.

bool HasNamespaceName(void) const

Check if object data type has namespace name.

void SetFormatFlags(unsigned long flags)

MSerial_SkipUnknownVariants(ESerialSkipUnknown fmt)

void SetNamespacePrefix(const string &ns_prefix)

Set namespace prefix.

CSerialAttribInfoItem(const string &name, const string &ns_name, const CStringUTF8 &value)

const string & GetNamespacePrefix(void) const

Get namespace prefix.

void x_Decode(const CStringUTF8 &value)

static void SetVerifyDataThread(ESerialVerifyData verify)

MSerial_FixNonPrint(EFixNonPrint fnp)

void x_Copy(const CAnyContentObject &other)

void SetNamespaceName(const string &ns_name)

Set namespace name.

const string & GetName(void) const

Get local name of the information item.

virtual ~CSerialAttribInfoItem(void)

virtual const CTypeInfo * GetThisTypeInfo(void) const =0

CNcbiIos & MSerial_VerifyDefault(CNcbiIos &io)

Define verification of un-initialized data members.

vector< CSerialAttribInfoItem > m_Attlist

static const char * ms_UnassignedStr

bool HasNamespacePrefix(void) const

Check if data type has namespace prefix.

unsigned int TSerial_Format_Flags

MSerial_Format –.

MSerialXml_DefaultStringEncoding(EEncoding fmt)

unsigned int TSerial_Xml_Flags

MSerial_VerifyData(ESerialVerifyData fmt)

const string & GetName(void) const

Get local name.

void SetValue(const CStringUTF8 &value)

Set normalized value.

virtual bool Equals(const CSerialObject &object, ESerialRecursionMode how=eRecursive) const

Check if both objects contain the same values.

MSerial_Format & operator()(TSerial_Xml_Flags flags)

const string & GetNamespacePrefix(void) const

Get namespace prefix.

ESerialDataFormat

Data file format.

CNcbiIos & MSerial_VerifyYes(CNcbiIos &io)

const vector< CSerialAttribInfoItem > & GetAttributes(void) const

Get object attributes.

virtual ~CSerialObject(void)

CNcbiIos & MSerial_VerifyDefValue(CNcbiIos &io)

@ eSerialSkipUnknown_Never

never skip (even if set to skip later on)

@ eSerialSkipUnknown_No

do not skip (throw exception)

@ eSerialSkipUnknown_Yes

do skip

@ eSerialSkipUnknown_Always

always skip (even if set not to later on)

@ eSerialSkipUnknown_Default

use current default

@ eFNP_Allow

pass through unchanged, post no error message

@ eFNP_Skip

skip, post no error message

@ eFNP_Throw

replace with '#', throw an exception

@ eFNP_Abort

replace with '#', post an error of severity FATAL

@ eFNP_ReplaceAndWarn

replace with '#', post an error of severity ERROR

@ eFNP_Replace

replace with '#' silently

@ eSerialVerifyData_Never

never verify (even if set to verify later on)

@ eSerialVerifyData_DefValueAlways

initialize field with default

@ eSerialVerifyData_DefValue

initialize field with default

@ eSerialVerifyData_Yes

do verify

@ eSerialVerifyData_Always

always verify (even if set not to later on)

@ eSerialVerifyData_No

do not verify

@ eSerialVerifyData_Default

use current default

@ eSerial_AsnText

ASN.1 text.

@ eSerial_AsnBinary

ASN.1 binary.

EFixNonPrint FixNonPrint(EFixNonPrint how)

TObjectPtr GetObjectPtr(void) const

Get pointer to object.

static CObjectOStream * Open(ESerialDataFormat format, CNcbiOstream &outStream, bool deleteOutStream)

Create serial object writer and attach it to an output stream.

TTypeInfo GetTypeInfo(void) const

static CObjectIStream * Open(ESerialDataFormat format, CNcbiIstream &inStream, bool deleteInStream)

Create serial object reader and attach it to an input stream.

EFixNonPrint FixNonPrint(EFixNonPrint how)

TConstObjectPtr GetObjectPtr(void) const

Get pointer to object.

virtual void DebugDump(CDebugDumpContext ddc, unsigned int depth) const

Define method for dumping debug information.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

IO_PREFIX::istream CNcbiIstream

Portable alias for istream.

IO_PREFIX::ios CNcbiIos

Portable alias for ios.

NCBI_NS_STD::string::size_type SIZE_TYPE

size_type rfind(const CTempString match, size_type pos=npos) const

Find the first instance of the entire matching string within the current string in a backward directi...

static int CompareNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive compare of a substring with another string.

static bool EndsWith(const CTempString str, const CTempString end, ECase use_case=eCase)

Check if a string ends with a specified suffix value.

size_type size(void) const

Return the length of the represented array.

@ eEncoding_ISO8859_1

Note: From the point of view of the C++.

#define DEFINE_STATIC_FAST_MUTEX(id)

Define static fast mutex and initialize it.

bool HasNamespaceName(void) const

Check if data type has namespace name.

const CItemsInfo & GetItems(void) const

ETypeFamily GetTypeFamily(void) const

const string & GetNamespacePrefix(void) const

Get namespace prefix.

const string & GetNamespaceName(void) const

Get namespace name.

bool HasNamespacePrefix(void) const

Check if data type has namespace prefix.

virtual void Assign(TObjectPtr dst, TConstObjectPtr src, ESerialRecursionMode how=eRecursive) const =0

Set object to copy of another one.

virtual bool Equals(TConstObjectPtr object1, TConstObjectPtr object2, ESerialRecursionMode how=eRecursive) const =0

Check if both objects contain the same values.

Definition of all error codes used in serial libraries (xser.lib, xcser.lib).

where boath are integers</td > n< td ></td > n</tr > n< tr > n< td > tse</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> TSE option controls what blob is smart and slim</td> n<td> orig</td> n</tr> n<tr> n<td> last_modified</td> n<td> optional</td> n<td> Integer</td> n<td class=\"description\"> The blob last modification If provided then the exact match will be requested with n the Cassandra storage corresponding field value</td> n<td> Positive integer Not provided means that the most recent match will be selected</td> n<td></td> n</tr> n<tr> n<td> use_cache</td> n<td> optional</td> n<td> String</td> n<td class=\"description\"> The option controls if the Cassandra LMDB cache and or database should be used It n affects the seq id resolution step and the blob properties lookup step The following n options are BIOSEQ_INFO and BLOB_PROP at all

const struct ncbi::grid::netcache::search::fields::SIZE size

const GenericPointer< typename T::ValueType > T2 value

const CharType(& source)[N]

Static variables safety - create on demand, destroy on application termination.

Multi-threading – mutexes; rw-locks; semaphore.

Multi-threading – classes, functions, and features.

static EFixNonPrint s_FlagsToFixNonPrint(CNcbiIos &io)

typedef NCBI_PARAM_TYPE(SERIAL, VERIFY_DATA_GET) TSerialVerifyData

static long s_SkipUnkMembersToFlags(ESerialSkipUnknown fmt)

#define eFixNonPrint_Skip

#define eSerIndex_SkipUnkVariants

#define eFixNonPrint_Replace

#define eSkipUnkVariants_Yes

#define eSerIndex_SkipUnkMembers

static long & s_SerFlags(CNcbiIos &io, size_t idx)

static ESerialVerifyData s_FlagsToVerify(CNcbiIos &io)

#define eSerIndex_Encoding

static ESerialDataFormat s_FlagsToFormat(CNcbiIos &io)

static long s_VerifyToFlags(ESerialVerifyData fmt)

static TSerial_Format_Flags s_FlagsToFormatFlags(CNcbiIos &io)

#define eSkipUnkMembers_No

#define eSkipUnkVariants_No

static long s_FixNonPrintToFlags(EFixNonPrint fnp)

NCBI_PARAM_ENUM_ARRAY(ESerialVerifyData, SERIAL, VERIFY_DATA_GET)

static long s_EncodingToFlags(EEncoding fmt)

#define eSkipUnkMembers_Yes

static bool IsSameTypeInfo(const CSerialObject &obj1, const CSerialObject &obj2)

NCBI_PARAM_ENUM_DECL(ESerialVerifyData, SERIAL, VERIFY_DATA_GET)

static long s_FormatFlagsToFlags(unsigned long flags)

static long s_SkipUnkVariantsToFlags(ESerialSkipUnknown fmt)

NCBI_PARAM_ENUM_DEF(ESerialVerifyData, SERIAL, VERIFY_DATA_GET, eSerialVerifyData_Default)

#define eFixNonPrint_Throw

#define eFixNonPrint_Allow

static ESerialSkipUnknown s_FlagsToSkipUnkMembers(CNcbiIos &io)

#define eSkipUnkVariants_All

#define eFixNonPrint_ReplaceAndWarn

static ESerialSkipUnknown s_FlagsToSkipUnkVariants(CNcbiIos &io)

static EEncoding s_FlagsToEncoding(CNcbiIos &io)

#define eFixNonPrint_Default

CNcbiOstream & operator<<(CNcbiOstream &out, SPrintIdentifier s)

static long s_FormatToFlags(ESerialDataFormat fmt)

#define eFixNonPrint_Abort

#define eSkipUnkMembers_All

#define eSerIndex_FixNonPrint

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

SPrintIdentifier(const CTempString &s)

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