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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/serialbase_8hpp_source.html below:

NCBI C++ ToolKit: include/serial/serialbase.hpp Source File

1 #ifndef SERIALBASE__HPP 2 #define SERIALBASE__HPP 43 #define BITSTRING_AS_VECTOR 0 45 #if !BITSTRING_AS_VECTOR 60 #if BITSTRING_AS_VECTOR 112 const char

* member_names,

117 const char

* variant_names,

126 template

class

Class>

132 static_cast<

Class*

>

(object)->

PreRead

();

136 static_cast<

Class*

>

(object)->

PostRead

();

140 static_cast<const

Class*

>

(object)->

PreWrite

();

144 static_cast<const

Class*

>

(object)->

PostWrite

();

166 int

file_line)

const

;

176 return

ms_UnassignedStr;

182 return

ms_UnassignedByte;

186 bool

HasNamespaceName(

void

)

const

;

188 const string

& GetNamespaceName(

void

)

const

;

191 bool

HasNamespacePrefix(

void

)

const

;

193 const string

& GetNamespacePrefix(

void

)

const

;

195 template

typename

Enum,

size_t

206 for

(

const auto

: e) {

211

Tparent::flip(x_Arg(e));

215 return

Tparent::operator[](x_Arg(e));

218

Tparent::reset(x_Arg(e));

222

Tparent::set(x_Arg(e),

val

);

230 return static_cast<size_t>

(flag);

248 const string

& GetName(

void

)

const

;

250 const string

& GetNamespaceName(

void

)

const

;

271 return

GetTypeInfo();

273 static const CTypeInfo

* GetTypeInfo(

void

);

280 void

SetName(

const string

& name);

282 const string

& GetName(

void

)

const

;

289 void

SetNamespaceName(

const string

& ns_name);

291 const string

& GetNamespaceName(

void

)

const

;

293 void

SetNamespacePrefix(

const string

& ns_prefix);

295 const string

& GetNamespacePrefix(

void

)

const

;

298 void

AddAttribute(

const string

& name,

301 const

vector<CSerialAttribInfoItem>& GetAttributes(

void

)

const

;

337 template

class

TPrim>

347 const

TPrim&

Get

(

void

)

const 359 operator

TPrim(

void

)

const 375 return

m_Data <

value

;

379 return

m_Data >

value

;

383 return

m_Data ==

value

;

387 return

m_Data !=

value

;

400 template

class

TStd>

413 template

class

TString>

426 template

class

TKey,

class

TStorage>

439 template

typename

450

(

static_cast<void

>

(

m_Buffer

));

456

(

static_cast<const void

>

(

m_Buffer

));

484 if

(

typeid

(src) !=

typeid

(dest) ) {

485 string msg

(

"Assignment of incompatible types: "

);

486 msg

typeid

(dest).name();

488 msg

typeid

(src).name();

491

C::GetTypeInfo()->Assign(&dest, &src, how);

500 if

(

typeid

(object1) !=

typeid

(object2) ) {

501 string msg

(

"Cannot compare types: "

);

502 msg

typeid

(object1).name();

504 msg

typeid

(object2).name();

507 return

C::GetTypeInfo()->Equals(&object1, &object2, how);

511 template

typename

516 type

->Assign(obj, &src);

517 return static_cast<C

>

(obj);

529 static bool

HasSerialFormatting(

CNcbiIos

& io);

535 void

SetFlags(

CNcbiIos

& io)

const

;

536 void

SetFormatFlags(

unsigned long flags

);

696 #define MSerial_AsnText MSerial_Format_AsnText() 697 #define MSerial_AsnBinary MSerial_Format_AsnBinary() 698 #define MSerial_Xml MSerial_Format_Xml() 699 #define MSerial_Json MSerial_Format_Json() 702 #define MSerial_FlatAsnText MSerial_AsnText(fSerial_AsnText_NoIndentation | fSerial_AsnText_NoEol) 739 return

s +

.tellg();

748 return

s.substr(

.tellg());

823 return

this->

operator CRef<T>

();

826 template

typename

operator CRef<T>

()

const 833 template

typename

operator T

()

const 888 #define ASN_STRING(s) SNcbi_AsnTextProxy(s) 889 #define ASN(...) ASN_STRING(#__VA_ARGS__) 897 template

class

CInfo>

903 template

class

CInfo>

909 template

class

CInfo>

915 template

class

CInfo>

921 template

class

CInfo>

927 template

class

CInfo>

934 #define NCBISER_HAVE_PRE_READ(Class) \ 935 template<class CInfo> \ 937 void NCBISERSetPreRead(const Class* , CInfo* info) \ 939 NCBI_NS_NCBI::SetPreRead \ 940 (info, &NCBI_NS_NCBI::CClassPrePostReadWrite<Class>::PreRead);\ 943 #define NCBISER_HAVE_POST_READ(Class) \ 944 template<class CInfo> \ 946 void NCBISERSetPostRead(const Class* , CInfo* info) \ 948 NCBI_NS_NCBI::SetPostRead \ 949 (info, &NCBI_NS_NCBI::CClassPrePostReadWrite<Class>::PostRead);\ 952 #define NCBISER_HAVE_PRE_WRITE(Class) \ 953 template<class CInfo> \ 955 void NCBISERSetPreWrite(const Class* , CInfo* info) \ 957 NCBI_NS_NCBI::SetPreWrite \ 958 (info, &NCBI_NS_NCBI::CClassPrePostReadWrite<Class>::PreWrite);\ 961 #define NCBISER_HAVE_POST_WRITE(Class) \ 962 template<class CInfo> \ 964 void NCBISERSetPostWrite(const Class* , CInfo* info) \ 966 NCBI_NS_NCBI::SetPostWrite \ 967 (info, &NCBI_NS_NCBI::CClassPrePostReadWrite<Class>::PostWrite);\ 970 #define NCBISER_HAVE_GLOBAL_READ_MEMBER_HOOK(Class, Name, Hook) \ 971 template<class CInfo> \ 973 void NCBISERSetGlobalReadMemberHook(const Class* , \ 976 NCBI_NS_NCBI::SetGlobalReadMemberHook(info, Name, Hook); \ 979 #define NCBISER_HAVE_GLOBAL_READ_VARIANT_HOOK(Class, Name, Hook) \ 980 template<class CInfo> \ 982 void NCBISERSetGlobalReadVariantHook(const Class* , \ 985 NCBI_NS_NCBI::SetGlobalReadVariantHook(info, Name, Hook); \ 989 #define DECLARE_INTERNAL_TYPE_INFO() \ 990 typedef const NCBI_NS_NCBI::CTypeInfo* TTypeInfo; \ 991 virtual TTypeInfo GetThisTypeInfo(void) const { return GetTypeInfo(); } \ 992 static TTypeInfo GetTypeInfo(void) 994 #define ENUM_METHOD_NAME(EnumName) \ 995 NCBI_NAME2(GetTypeInfo_enum_,EnumName) 996 #define DECLARE_ENUM_INFO(EnumName) \ 997 const NCBI_NS_NCBI::CEnumeratedTypeValues* ENUM_METHOD_NAME(EnumName)(void) 998 #define DECLARE_INTERNAL_ENUM_INFO(EnumName) \ 999 static DECLARE_ENUM_INFO(EnumName) 1002 #define DECLARE_STD_ALIAS_TYPE_INFO() \ 1003 const NCBI_NS_NCBI::CTypeInfo* GetThisTypeInfo(void) const { return GetTypeInfo(); } \ 1004 static const NCBI_NS_NCBI::CTypeInfo* GetTypeInfo(void) 1008 #define ASN_STRUCT_NAME(AsnStructName) NCBI_NAME2(struct_, AsnStructName) 1009 #define ASN_STRUCT_METHOD_NAME(AsnStructName) \ 1010 NCBI_NAME2(GetTypeInfo_struct_,AsnStructName) 1012 #define DECLARE_ASN_TYPE_INFO(AsnStructName) \ 1013 const NCBI_NS_NCBI::CTypeInfo* ASN_STRUCT_METHOD_NAME(AsnStructName)(void) 1014 #define DECLARE_ASN_STRUCT_INFO(AsnStructName) \ 1015 struct ASN_STRUCT_NAME(AsnStructName); \ 1016 DECLARE_ASN_TYPE_INFO(AsnStructName); \ 1018 const NCBI_NS_NCBI::CTypeInfo* \ 1019 GetAsnStructTypeInfo(const ASN_STRUCT_NAME(AsnStructName)* ) \ 1021 return ASN_STRUCT_METHOD_NAME(AsnStructName)(); \ 1023 struct ASN_STRUCT_NAME(AsnStructName) 1025 #define DECLARE_ASN_CHOICE_INFO(AsnChoiceName) \ 1026 DECLARE_ASN_TYPE_INFO(AsnChoiceName)

Serialization / compression of bvector<>. Set theoretical operations on compressed BLOBs.

Serializable object that stores any combination of parsable data.

CNcbiOstrstreamToString class helps convert CNcbiOstrstream to a string Sample usage:

Read hook for a choice variant (CHOICE)

Read hook for data member of a containing object (eg, SEQUENCE)

XML attribute information item.

Root class for all serialization exceptions.

Base class for all serializable objects.

Base class for user-defined serializable classes to allow for objects assignment and comparison.

Template class for strict ID types.

CTypeInfo class contains all information about C++ types (both basic and classes): members and layout...

MSerialXml_DefaultStringEncoding â.

MSerial_SkipUnknownMembers â.

MSerial_SkipUnknownVariants â.

Include a standard set of the NCBI C++ Toolkit most basic headers.

static unsigned char depth[2 *(256+1+29)+1]

bool operator==(const CEquivRange &A, const CEquivRange &B)

std::ofstream out("events_result.xml")

main entry point for tests

#define test(a, b, c, d, e)

static const char * str(char *buf, int n)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

ESerialRecursionMode

How to assign and compare child sub-objects of serial objects.

bool operator>(const T &value) const

void SetGlobalReadMemberHook(CTypeInfo *start_info, const char *member_names, CReadClassMemberHook *hook)

void(* TPreReadFunction)(const CTypeInfo *info, void *object)

unsigned int TSerial_Json_Flags

void SetGlobalReadVariantHook(CTypeInfo *start_info, const char *variant_names, CReadChoiceVariantHook *hook)

CAliasBase< CStrictId< TKey, TStorage > > TParent

SNcbi_AsnTextProxy(const SNcbi_AsnTextProxy &)=delete

static CStringUTF8 UnassignedStringUTF8(void)

void NCBISERSetPreRead(const void *, CInfo *)

void SetPostRead(CClassTypeInfo *info, TPostReadFunction function)

static size_t x_Arg(Enum flag)

static char UnassignedByte(void)

CStdAliasBase(const CStrictId< TKey, TStorage > &value)

CNcbiOstream & operator<<(CNcbiOstream &io, const MSerial_Flags &obj)

CMemberIndex & set(Enum e, bool val=true)

bool operator!=(const T &value) const

static void PreWrite(const CTypeInfo *, const void *object)

ESerialSkipUnknown

Skip unknown members parameters.

void NCBISERSetGlobalReadVariantHook(const void *, CInfo *)

CStringAliasBase(const TString &value)

EFixNonPrint

How to process non-printing character in the ASN VisibleString.

TObjectPtr GetChoiceObjectPtr(const CObjectInfoCV &variant)

virtual const CTypeInfo * GetThisTypeInfo(void) const

bool SerialEquals(const C &object1, const C &object2, ESerialRecursionMode how=eRecursive)

Compare serial objects.

CAliasBase(const TPrim &value)

void SetPreWrite(CClassTypeInfo *info, TPreWriteFunction function)

char TBuffer[sizeof(TObject)]

unsigned int TSerial_AsnText_Flags

void(* TPreWriteFunction)(const CTypeInfo *info, const void *object)

size_t TMemberIndex

Type used for indexing class members and choice variants.

static TConstObjectPtr GetDataPtr(const TThis *alias)

TObject & operator*(void)

void NCBISERSetPreWrite(const void *, CInfo *)

virtual bool UserOp_Equals(const CSerialUserOp &object) const =0

Will be called after comparing the datatool-generated members.

CNcbiIstream & operator>>(CNcbiIstream &io, const MSerial_Flags &obj)

virtual void UserOp_Assign(const CSerialUserOp &source)=0

Will be called after copying the datatool-generated members.

bool operator==(const T &value) const

C & SerialAssign(C &dest, const C &src, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

MSerial_Format_AsnBinary(void)

ESerialVerifyData

Data verification parameters.

CNcbiIstream & ReadObject(CNcbiIstream &str, TObjectPtr ptr, TTypeInfo info)

const void * TConstObjectPtr

static void PostRead(const CTypeInfo *, void *object)

bool operator[](Enum e) const

CAliasBase< TPrim > TThis

bm::bvector< > CBitString

CNcbiOstream & WriteObject(CNcbiOstream &str, TConstObjectPtr ptr, TTypeInfo info)

void Set(const TPrim &value)

MSerial_Flags(const MSerial_Flags &o)

const CTypeInfo * TTypeInfo

void SetPreRead(CClassTypeInfo *info, TPreReadFunction function)

SNcbi_AsnTextProxy & operator=(SNcbi_AsnTextProxy &&)=delete

static const char ms_UnassignedByte

void SetFlags(CNcbiIos &io) const

void NCBISERSetPostRead(const void *, CInfo *)

CStdAliasBase(const TStd &value)

CNcbiIos & MSerial_VerifyNo(CNcbiIos &io)

MSerial_Format_Json(void)

void(* TPostWriteFunction)(const CTypeInfo *info, const void *object)

CNcbiIos & MSerial_None(CNcbiIos &io)

Reset all formatting flags for the I/O stream.

void NCBISERSetPostWrite(const void *, CInfo *)

void NCBISERSetGlobalReadMemberHook(const void *, CInfo *)

CAliasBase< TString > TParent

CMemberIndex & flip(Enum e)

SNcbi_AsnTextProxy(const char *s, size_t len)

SNcbi_AsnTextProxy(SNcbi_AsnTextProxy &&)=default

void SetPostWrite(CClassTypeInfo *info, TPostWriteFunction function)

CStringAliasBase< TString > TThis

const TPrim & Get(void) const

CAliasBase< TStd > TParent

bool operator<(const T &value) const

static void PreRead(const CTypeInfo *, void *object)

TObjectPtr GetClassObjectPtr(const CObjectInfoMI &member)

void operator>>(CRef< CSerialObject > dest) const

CStdAliasBase< CStrictId< TKey, TStorage > > TThis

const TObject & operator*(void) const

SNcbi_AsnTextProxy(const char *s)

CMemberIndex(initializer_list< Enum > e)

virtual const CTypeInfo * GetThisTypeInfo(void) const =0

CNcbiIos & MSerial_VerifyDefault(CNcbiIos &io)

Define verification of un-initialized data members.

vector< CSerialAttribInfoItem > m_Attlist

C * SerialClone(const C &src)

Create on heap a clone of the source object.

static const char * ms_UnassignedStr

SNcbi_AsnTextProxy & operator=(const SNcbi_AsnTextProxy &)=delete

unsigned int TSerial_Format_Flags

MSerial_Format â.

#define MSerial_AsnText

I/O stream manipulators â.

static string UnassignedString(void)

unsigned int TSerial_Xml_Flags

CStdAliasBase< TStd > TThis

MSerial_Format_AsnText(void)

CMemberIndex & reset(Enum e)

ESerialDataFormat

Data file format.

static void PostWrite(const CTypeInfo *, const void *object)

CNcbiIos & MSerial_VerifyYes(CNcbiIos &io)

void(* TPostReadFunction)(const CTypeInfo *info, void *object)

CNcbiIos & MSerial_VerifyDefValue(CNcbiIos &io)

@ eRecursive

Recursively.

@ eSerial_AsnText

ASN.1 text.

@ eSerial_AsnBinary

ASN.1 binary.

virtual void DebugDump(CDebugDumpContext ddc, unsigned int depth) const

Define method for dumping debug information.

void Reset(void)

Reset reference object.

CObject & operator=(const CObject &src) THROWS_NONE

Assignment operator.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

IO_PREFIX::istream CNcbiIstream

Portable alias for istream.

IO_PREFIX::ios CNcbiIos

Portable alias for ios.

static CStringUTF8 AsUTF8(const CTempString &src, EEncoding encoding, EValidate validate=eNoValidate)

Convert into UTF8 from a C/C++ string.

#define NCBI_XSERIAL_EXPORT

Definition of all error codes used in serial libraries (xser.lib, xcser.lib).

const GenericPointer< typename T::ValueType > T2 value

const CharType(& source)[N]

static bool Equals(const CVariation::TPlacements &p1, const CVariation::TPlacements &p2)

Compressed bitset (entry point to bm.h)

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

std::istream & in(std::istream &in_, double &x_)

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

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