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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/sequester__sets_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/sequester_sets.cpp Source File

wxWindowID

,

wxString& caption,

wxPoint& pos,

wxSize&

,

style )

(parent,

, caption, pos,

, style);

( wxWindow* parent, wxWindowID

,

wxString& caption,

wxPoint& pos,

wxSize&

,

style )

SetExtraStyle(wxWS_EX_BLOCK_EVENTS);

wxFrame::Create( parent,

, caption, pos,

, style );

wxVisualAttributes attr = wxPanel::GetClassDefaultAttributes();

(attr.colBg != wxNullColour) {

SetOwnBackgroundColour(attr.colBg);

GetSizer()->SetSizeHints(

);

wxBoxSizer* itemBoxSizer2 =

wxBoxSizer(wxVERTICAL);

itemDialog1->SetSizer(itemBoxSizer2);

itemBoxSizer2->Add(

, 1, wxGROW|wxALL, 5);

->AddPage(panel3,

(

));

->AddPage(panel7,

(

));

->AddPage(panel10,

(

));

wxBoxSizer* itemBoxSizer12 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer12, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

itemBoxSizer12->Add(

, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxButton* itemButton14 =

wxButton( itemDialog1,

,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer12->Add(itemButton14, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

view.

(

, enable);

vector<CRef<CSeq_entry> > updated_entries;

updated_entries.push_back(saved);

(

= 0;

< updated_entries.size();

++)

(saved->

())

->SetStr(

);

->SetStr(

);

param->

().SetStr(

);

.push_back(param);

->SetStr(

);

param->

().SetBool(

);

.push_back(param);

->SetStr(

);

param->

().SetBool(

);

.push_back(param);

vector< vector<int> > &subsets =

();

(!this->

|| subsets.empty() || subsets.front().empty() || !prjSrv)

prjSrv->RemoveProjectView(*old_view);

(

s = 0; s < subsets.size(); s++)

(

j = 0; j < subsets[s].size(); j++)

= subsets[s][j];

selected_set.

(entry);

( selected_set.

(entry) == selected_set.

() )

(unique_set.

(bssh) == unique_set.

())

set_vec.push_back(bssh);

unique_set.

(bssh);

vector<CBioseq_set_Handle> set_vec;

(

= set_vec.size() - 1;

>= 0;

--)

vector<CBioseq_set_Handle> set_vec;

(

= 0;

< set_vec.size();

++)

(

.IsEmptySeq_set())

((*it)->IsSetDescr())

master->

().push_back(cpy);

CSeq_descr::Tdata::iterator d = master->

().begin();

(d != master->

().end())

((*d)->Equals(**s))

d = master->

().erase(d);

(master->

() && !master->

().empty())

CBioseq::TDescr::Tdata::iterator di = bse.

().Set().begin();

(di != bse.

().Set().end() && !(*di)->Equals(**d))

(di != bse.

().Set().end())

((*it)->IsSet())

CBioseq_set::TDescr::Tdata::iterator di = bsse.

().Set().begin();

(di != bsse.

().Set().end() && !(*di)->Equals(**d))

(di != bsse.

().Set().end())

( ! bioseq_set_h )

pSeqDescrToCopy = pSeqDescrWithChosenDescs;

(!pSeqDescrToCopy->

() || pSeqDescrToCopy->

().empty())

direct_child_ci->GetEditHandle().AddDescr(*

(*pSeqDescrToCopy) );

CBioseq_set::TDescr::Tdata::iterator di = bsse.

().Set().begin();

(di != bsse.

().Set().end() && !(*di)->Equals(**d))

(di != bsse.

().Set().end())

CBioseq_set_EditHandle –.

const CBioseq & GetNucFromNucProtSet(void) const

const CSeq_id * GetFirstId() const

CRegistryWriteView GetWriteView(const string &section)

get a read-write view at a particular level.

static CGuiRegistry & GetInstance()

access the application-wide singleton

CProjectService - a service providing API for operations with Workspaces and Projects.

static bool ShouldStayInPlace(const objects::CSeqdesc &desc)

vector< vector< int > > & GetSubsets()

void SetSubsets(const set< objects::CBioseq_Handle > &selected)

void Set(const string &key, int val)

access a named key at this level, with no recursion

void ReadBioseq(const objects::CSeq_entry &se)

vector< SSetSeqRecord > m_SetSeq

objects::CSeq_entry_Handle m_TopSeqEntry

@Seq_descr.hpp User-defined methods of the data storage class.

@ fRecursive

Iterate recursively.

CSequesterSets()

Constructors.

vector< vector< int > > & GetSubsets()

void BioseqSetDescriptorPropagateUp(objects::CBioseq_set_Handle set)

bool Create(wxWindow *parent, wxWindowID id=wxID_ANY, const wxString &caption=_("Sequester Sets"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL)

Creation.

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

void RecursiveCollectSets(const objects::CBioseq_set_Handle &bssh, vector< objects::CBioseq_set_Handle > &set_vec, set< objects::CBioseq_set_Handle > &unique_set)

void OnAccept(wxCommandEvent &event)

void OnCancel(wxCommandEvent &event)

void SetSubsets(const set< objects::CBioseq_Handle > &selected)

void EnableSmartPackageDone(bool enable)

CIRef< IProjectView > m_TextView

void BioseqSetDescriptorPropagateDown(const objects::CBioseq_set_Handle &bioseq_set_h)

void Init()

Initialises member variables.

void CreateControls()

Creates the controls and sizers.

wxButton * m_AcceptButton

void RecursivePropagateUp(void)

void RecursivePropagateDown(void)

virtual ~CSequesterSets()

Destructor.

static bool ShowToolTips()

Should we show tooltips?

wxButton * m_SequesterButton

CRef< objects::CUser_object > GetParams()

void OnSequester(wxCommandEvent &event)

wxBitmap GetBitmapResource(const wxString &name)

Retrieves bitmap resources.

CConstRef< objects::CSeq_submit > m_SeqSubmit

CRef< objects::CSeq_entry > m_SavedEntry

class IProjectView defines the abstract interface for views observing projects.

IWorkbench is the central interface in the application framework.

iterator_bool insert(const value_type &val)

const_iterator find(const key_type &key) const

const_iterator end() const

static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

CIRef< T > GetServiceByType()

retrieves a typed reference to a service, the name of C++ type is used as the name of the service.

vector< SConstScopedObject > TConstScopedObjects

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

C * SerialClone(const C &src)

Create on heap a clone of the source object.

void SetDescr(TDescr &v) const

TClass GetClass(void) const

CBioseq_set_Handle GetParentBioseq_set(void) const

Return a handle for the parent Bioseq-set, or null handle.

TSet SelectSet(TClass set_class=CBioseq_set::eClass_not_set) const

Convert the empty Seq-entry to Bioseq-set.

void SetDescr(TDescr &v) const

void SelectNone(void) const

Make this Seq-entry to be empty.

bool AddSeqdesc(CSeqdesc &d) const

CSeq_entry_Handle GetSeq_entry_Handle(void) const

Get parent Seq-entry handle.

CBioseq_set_Handle GetParentBioseq_set(void) const

Return a handle for the parent Bioseq-set, or null handle.

TSeq SelectSeq(CBioseq &seq) const

Make the empty Seq-entry be in seq state with specified Bioseq object.

CSeq_entry_EditHandle GetEditHandle(void) const

Get 'edit' version of handle.

CSeq_entry_Handle GetParentEntry(void) const

Return a handle for the parent seq-entry of the bioseq.

bool IsSetClass(void) const

CRef< CSeqdesc > RemoveSeqdesc(const CSeqdesc &d) const

CConstRef< CSeq_entry > GetCompleteSeq_entry(void) const

Complete and get const reference to the seq-entry.

CRef< CSeqdesc > RemoveSeqdesc(const CSeqdesc &d) const

CSeq_entry_EditHandle GetParentEntry(void) const

Get parent seq-entry edit handle.

bool HasParentEntry(void) const

Check if current seq-entry has a parent.

@ eNonRecursive

Deprecated.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static const char label[]

TData & SetData(void)

Assign a value to Data data member.

void SetLabel(TLabel &value)

Assign a value to Label data member.

void SetType(TType &value)

Assign a value to Type data member.

void SetData(TData &value)

Assign a value to Data data member.

vector< CRef< CUser_field > > TData

const TSeq & GetSeq(void) const

Get the variant data.

TSet & SetSet(void)

Select the variant.

const TSet & GetSet(void) const

Get the variant data.

bool IsSeq(void) const

Check if variant Seq is selected.

const TSeq_set & GetSeq_set(void) const

Get the Seq_set member data.

list< CRef< CSeq_entry > > TSeq_set

TSeq & SetSeq(void)

Select the variant.

@ eClass_nuc_prot

nuc acid and coded proteins

@ eClass_genbank

converted genbank

list< CRef< CSeqdesc > > Tdata

const Tdata & Get(void) const

Get the member data.

bool IsSet(void) const

Check if a value has been assigned to data member.

Tdata & Set(void)

Assign a value to data member.

void Reset(void)

Reset data member.

@ e_not_set

No variant selected.

void ReportUsage(const wxString &dialog_name)

Report opening & accepting events in the editing package.

const struct ncbi::grid::netcache::search::fields::SIZE size

#define ID_SEQUESTER_BUTTON

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