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NCBI C++ ToolKit: include/objtools/format/items/sequence_item.hpp Source File

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IsFirst(

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virtual void Format(IFormatter &formatter, IFlatTextOStream &text_os) const =0

virtual void x_GatherInfo(CBioseqContext &)

const CSeqVector & GetSequence(void) const

TSeqPos GetTo(void) const

TSeqPos GetFrom(void) const

virtual EItem GetItemType(void) const =0

Include a standard set of the NCBI C++ Toolkit most basic headers.

static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)

SBlastSequence GetSequence(const objects::CSeq_loc &sl, EBlastEncoding encoding, objects::CScope *scope, objects::ENa_strand strand=objects::eNa_strand_plus, ESentinelType sentinel=eSentinels, std::string *warnings=NULL)

Retrieves a sequence using the object manager.

unsigned int TSeqPos

Type for sequence locations and lengths.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_FORMAT_EXPORT

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