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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/sequence__item_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/format/sequence_item.cpp Source File

Go to the SVN repository for this file.

m_From(from), m_To(to), m_First(

)

coding =

.Config().IsModeRelease() ?

void x_SetObject(const CSerialObject &obj)

void Format(IFormatter &formatter, IFlatTextOStream &text_os) const override

void x_GatherInfo(CBioseqContext &ctx) override

EItem GetItemType() const override

virtual void FormatSequence(const CSequenceItem &seq, IFlatTextOStream &text_os)=0

Include a standard set of the NCBI C++ Toolkit most basic headers.

static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)

unsigned int TSeqPos

Type for sequence locations and lengths.

void SetCoding(TCoding coding)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

E_Choice

Choice variants.

@ e_Ncbieaa

extended ASCII 1 letter aa codes

@ e_Iupacna

IUPAC 1 letter nuc acid code.

@ e_Iupacaa

IUPAC 1 letter amino acid code.

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