Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/sequence__display_8hpp_source.html below:

NCBI C++ ToolKit: src/app/cn3d/sequence_display.hpp Source File

(

)

= 0;

*character,

*

,

*drawBackground,

*cellBackgroundColor)

= 0;

**sequence,

*index)

= 0;

*character,

*

,

*drawBackground,

*cellBackgroundColor)

;

**sequence,

*index)

*character,

*

,

*drawBackground,

*cellBackgroundColor)

;

**sequenceHandle,

*index)

;

*character,

*

,

*drawBackground,

*cellBackgroundColor)

;

**sequenceHandle,

*index)

{

; }

(

)

{

.size(); }

[

]->GetSequence();

(

*setColumns,

*setRows)

*drawBackground,

wxColour *cellBackgroundColor

(

columnLeft,

rowTop,

columnRight,

rowBottom);

(

columnFrom,

rowFrom,

columnTo,

rowTo);

static const char * bgColor

unsigned int AlignmentWidth(void) const

const Sequence * GetSequenceOfRow(unsigned int row) const

bool GetSequenceAndIndexAt(unsigned int alignmentColumn, unsigned int row, eUnalignedJustification justification, const Sequence **sequence, unsigned int *index, bool *isAligned) const

void SelectedRange(unsigned int row, unsigned int alnIndexFrom, unsigned int alnIndexTo, eUnalignedJustification justification, bool toggle) const

virtual ~DisplayRowFromAlignment(void)

const Sequence * GetSequence(void) const

DisplayRowFromAlignment(unsigned int r, BlockMultipleAlignment *a)

DisplayRow * Clone(const Old2NewAlignmentMap &newAlignments) const

bool GetSequenceAndIndexAt(unsigned int column, BlockMultipleAlignment::eUnalignedJustification justification, const Sequence **sequence, int *index) const

unsigned int Width(void) const

bool GetCharacterTraitsAt(unsigned int column, BlockMultipleAlignment::eUnalignedJustification justification, char *character, Vector *color, bool *drawBackground, Vector *cellBackgroundColor) const

void SelectedRange(unsigned int from, unsigned int to, BlockMultipleAlignment::eUnalignedJustification justification, bool toggle) const

BlockMultipleAlignment *const alignment

const Sequence * GetSequence(void) const

const Sequence *const sequence

virtual ~DisplayRowFromSequence(void)

DisplayRowFromSequence(const Sequence *s, unsigned int from, unsigned int to)

DisplayRow * Clone(const Old2NewAlignmentMap &newAlignments) const

bool GetCharacterTraitsAt(unsigned int column, BlockMultipleAlignment::eUnalignedJustification justification, char *character, Vector *color, bool *drawBackground, Vector *cellBackgroundColor) const

const unsigned int toIndex

bool GetSequenceAndIndexAt(unsigned int column, BlockMultipleAlignment::eUnalignedJustification justification, const Sequence **sequenceHandle, int *index) const

void SelectedRange(unsigned int from, unsigned int to, BlockMultipleAlignment::eUnalignedJustification justification, bool toggle) const

unsigned int Width(void) const

const unsigned int fromIndex

BlockMultipleAlignment *const alignment

const bool hasBackgroundColor

DisplayRow * Clone(const Old2NewAlignmentMap &newAlignments) const

bool GetSequenceAndIndexAt(unsigned int column, BlockMultipleAlignment::eUnalignedJustification justification, const Sequence **sequenceHandle, int *index) const

const Sequence * GetSequence(void) const

DisplayRowFromString(const std::string &s, const Vector color=Vector(0, 0, 0.5), const std::string &t="", bool hasBG=false, Vector bgColor=Vector(1, 1, 1), BlockMultipleAlignment *a=NULL)

virtual ~DisplayRowFromString(void)

const Vector backgroundColor

bool GetCharacterTraitsAt(unsigned int column, BlockMultipleAlignment::eUnalignedJustification justification, char *character, Vector *color, bool *drawBackground, Vector *cellBackgroundColor) const

void SelectedRange(unsigned int from, unsigned int to, BlockMultipleAlignment::eUnalignedJustification justification, bool toggle) const

unsigned int Width(void) const

virtual bool GetSequenceAndIndexAt(unsigned int column, BlockMultipleAlignment::eUnalignedJustification justification, const Sequence **sequence, int *index) const =0

virtual void SelectedRange(unsigned int from, unsigned int to, BlockMultipleAlignment::eUnalignedJustification justification, bool toggle) const =0

virtual DisplayRow * Clone(const Old2NewAlignmentMap &newAlignments) const =0

virtual const Sequence * GetSequence(void) const =0

virtual ~DisplayRow(void)

virtual unsigned int Width(void) const =0

virtual bool GetCharacterTraitsAt(unsigned int column, BlockMultipleAlignment::eUnalignedJustification justification, char *character, Vector *color, bool *drawBackground, Vector *cellBackgroundColor) const =0

bool GetRowTitle(unsigned int row, wxString *title, wxColour *color) const

bool GetCharacterTraitsAt(unsigned int column, unsigned int row, char *character, wxColour *color, bool *drawBackground, wxColour *cellBackgroundColor) const

bool ProximitySort(unsigned int displayRow)

bool CalculateRowScoresWithThreader(double weightPSSM)

void AddBlockBoundaryRows(void)

void FloatPDBRowsToTop(void)

BlockMultipleAlignment * GetAlignmentForRow(unsigned int row) const

DisplayRowFromString * FindBlockBoundaryRow(const BlockMultipleAlignment *forAlignment) const

void SortRowsByThreadingScore(double weightPSSM)

void AddRowFromAlignment(unsigned int row, BlockMultipleAlignment *fromAlignment)

void UpdateMaxRowWidth(void)

const Sequence * GetSequenceForRow(unsigned int row) const

bool SortRowsByLoopLength(unsigned int row, unsigned int alnIndex)

unsigned int NRows(void) const

void AddRowFromString(const std::string &anyString)

void RedrawAlignedMolecules(void) const

void SortRowsBySelfHit(void)

void UpdateAfterEdit(const BlockMultipleAlignment *forAlignment)

void FloatHighlightsToTop(void)

SequenceDisplay * Clone(const Old2NewAlignmentMap &newAlignments) const

void GetProteinSequences(SequenceList *seqs) const

bool GetDisplayCoordinates(const Molecule *molecule, unsigned int seqIndex, BlockMultipleAlignment::eUnalignedJustification justification, unsigned int *column, unsigned int *row)

unsigned int GetStartingColumn(void) const

void RowsAdded(unsigned int nRowsAddedToMultiple, BlockMultipleAlignment *multiple, int where=-1)

SequenceDisplay(bool editable, ViewerWindowBase *const *parentViewerWindow)

virtual ~SequenceDisplay(void)

void AddRow(DisplayRow *row)

void GetSize(unsigned int *setColumns, unsigned int *setRows) const

bool MouseDown(int column, int row, unsigned int controls)

void GetSequences(const BlockMultipleAlignment *forAlignment, SequenceList *seqs) const

void RemoveBlockBoundaryRows(void)

void RowsRemoved(const std::vector< unsigned int > &rowsRemoved, const BlockMultipleAlignment *multiple)

bool IsEditable(void) const

unsigned int startingColumn

void AddRowFromSequence(const Sequence *sequence, unsigned int from, unsigned int to)

ViewerWindowBase *const * viewerWindow

void GetRowOrder(const BlockMultipleAlignment *forAlignment, std::vector< unsigned int > *dependentRowOrder) const

void MouseOver(int column, int row) const

void DraggedCell(int columnFrom, int rowFrom, int columnTo, int rowTo)

std::vector< DisplayRow * > RowVector

void SortRowsByIdentifier(void)

void AddBlockBoundaryRow(BlockMultipleAlignment *forAlignment)

void UpdateBlockBoundaryRow(const BlockMultipleAlignment *forAlignment) const

std::vector< const Sequence * > SequenceList

void SelectedRectangle(int columnLeft, int rowTop, int columnRight, int rowBottom)

void SetStartingColumn(unsigned int column)

Include a standard set of the NCBI C++ Toolkit most basic headers.

static const char * column

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_SCOPE(ns)

Define a new scope.

The NCBI C++/STL use hints.

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

std::map< BlockMultipleAlignment *, BlockMultipleAlignment * > Old2NewAlignmentMap

#define row(bind, expected)

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4