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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/seqtable__util_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/seqtable_util.cpp Source File

(rows.size() == 0) {

vector<size_t>::const_iterator row_it = rows.begin();

CSeqTable_column::TData::TString::iterator it = col->

().SetString().begin();

(row_it != rows.end() && it != col->

().SetString().end()) {

(orig_pos == *row_it) {

it = col->

().SetString().erase(it);

CSeqTable_column::TData::TId::iterator it = col->

().SetId().begin();

(row_it != rows.end() && it != col->

().SetId().end()) {

(orig_pos == *row_it) {

it = col->

().SetId().erase(it);

CSeqTable_column::TData::TInt::iterator it = col->

().SetInt().begin();

(row_it != rows.end() && it != col->

().SetInt().end()) {

(orig_pos == *row_it) {

it = col->

().SetInt().erase(it);

CSeqTable_column::TData::TBit::iterator it = col->

().SetBit().begin();

(row_it != rows.end() && it != col->

().SetBit().end()) {

(orig_pos == *row_it) {

it = col->

().SetBit().erase(it);

CSeqTable_column::TData::TBytes::iterator it = col->

().SetBytes().begin();

(row_it != rows.end() && it != col->

().SetBytes().end()) {

(orig_pos == *row_it) {

it = col->

().SetBytes().erase(it);

CSeqTable_column::TData::TReal::iterator it = col->

().SetReal().begin();

(row_it != rows.end() && it != col->

().SetReal().end()) {

(orig_pos == *row_it) {

it = col->

().SetReal().erase(it);

(rows.size() > 0) {

->SetNum_rows(

->GetNum_rows() -

(rows.size()));

& field,

vector<size_t> rows_to_remove;

(

->GetData().IsInt()) {

CSeqTable_column::TData::TInt::const_iterator it =

->GetData().GetInt().begin();

(it !=

->GetData().GetInt().end()) {

(!string_constraint->DoesTextMatch(num)) {

rows_to_remove.push_back(

);

}

(

->GetData().IsString()) {

CSeqTable_column::TData::TString::const_iterator it =

->GetData().GetString().begin();

(it !=

->GetData().GetString().end()) {

(!string_constraint->DoesTextMatch(*it)) {

rows_to_remove.push_back(

);

}

(

->GetData().IsId()) {

CSeqTable_column::TData::TId::const_iterator it =

->GetData().GetId().begin();

(it !=

->GetData().GetId().end()) {

id_string = (*it)->AsFastaString();

(!string_constraint->DoesTextMatch(id_string)) {

rows_to_remove.push_back(

);

=

objects::CSeqTable_column();

->SetHeader().SetTitle(field);

column2 =

objects::CSeqTable_column();

->SetColumns().push_back(column2);

column1->

().SetString()[

] =

;

(!column1 && !column2) {

column1 =

objects::CSeqTable_column();

column1->

().SetString();

->SetColumns().push_back(column1);

column2 =

objects::CSeqTable_column();

column2->

().SetString();

->SetColumns().push_back(column2);

(row < column2->GetData().GetString().

()) {

column1->

().SetString()[

] = orig2;

column2->

().SetString()[

] = orig1;

column2 =

objects::CSeqTable_column();

->SetColumns().push_back(column2);

(objects::CSeq_table::TColumns, cit, values_table->GetColumns()) {

((*cit)->IsSetHeader() && (*cit)->GetHeader().IsSetTitle()

objects::CSeq_table::TColumns::iterator cit =

->SetColumns().begin();

(cit !=

->SetColumns().end()) {

((*cit)->IsSetHeader() && (*cit)->GetHeader().IsSetTitle()

cit =

->SetColumns().erase(cit);

col =

objects::CSeqTable_column();

col->SetHeader().SetTitle(

);

col->SetData().SetString();

->SetColumns().push_back(col);

col =

objects::CSeqTable_column();

col->SetHeader().SetTitle(

);

col->SetData().SetInt();

->SetColumns().push_back(col);

(

->SetData().SetString().size() <

+ 1) {

->SetData().SetString().push_back (

);

orig_val =

->GetData().GetString()[

];

->SetData().SetString()[

] = orig_val;

((*cit)->IsSetHeader() && (*cit)->GetHeader().IsSetTitle()

new_col->SetHeader().SetTitle(subtype_name);

(new_col->SetData().SetString().size() <

) {

new_col->SetData().SetString().push_back (

);

new_col->SetData().SetString().push_back(

);

->SetColumns().push_back(new_col);

((*cit)->IsSetHeader() && (*cit)->GetHeader().IsSetTitle()

((*cit)->SetData().SetInt().size() <

+ 1) {

(*cit)->SetData().SetInt().push_back (0);

(*cit)->SetData().SetInt()[

] =

;

new_col->SetHeader().SetTitle(subtype_name);

(new_col->SetData().SetInt().size() <

) {

new_col->SetData().SetInt().push_back (0);

new_col->SetData().SetInt().push_back(

);

->SetColumns().push_back(new_col);

(!col || !col->IsSetData() || !col->GetData().IsString() || col->GetData().GetSize() < 1) {

num_rows = col->GetData().GetSize();

(

= 0;

< num_rows;

++) {

col->SetData().SetString()[

] =

;

protein(

);

name1 = name1.substr(protein.length());

name2 = name2.substr(protein.length());

(pos != string::npos) {

name1 = name1.substr(0, pos);

(pos != string::npos) {

name2 = name2.substr(0, pos);

num_conflicts = 0;

CSeqTable_column::TData::TString::const_iterator it1 = orig_col->

().

().begin();

CSeqTable_column::TData::TString::const_iterator it2 = new_col->

().

().begin();

CSeqTable_column::TData::TInt::const_iterator it1 = new_col->

().

().begin();

CSeqTable_column::TData::TInt::const_iterator it2 = new_col->

().

().begin();

num_conflicts;

(!values_table || !values_table->IsSetNum_rows())

;

num_rows = values_table->GetNum_rows();

(objects::CSeq_table::TColumns, it, values_table->SetColumns()) {

((*it)->IsSetData() && (*it)->GetData().IsString()) {

((*it)->GetData().GetString().size() < num_rows) {

(*it)->SetData().SetString().push_back(

);

static const char * column

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool IsBlank(const CTempString str, SIZE_TYPE pos=0)

Check if a string is blank (has no text).

static SIZE_TYPE Find(const CTempString str, const CTempString pattern, ECase use_case=eCase, EDirection direction=eForwardSearch, SIZE_TYPE occurrence=0)

Find the pattern in the string.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

static bool Equal(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2, ECase use_case=eCase)

Test for equality of a substring with another string.

static string & ReplaceInPlace(string &src, const string &search, const string &replace, SIZE_TYPE start_pos=0, SIZE_TYPE max_replace=0, SIZE_TYPE *num_replace=0)

Replace occurrences of a substring within a string.

static const char label[]

bool IsBit(void) const

Check if variant Bit is selected.

void SetHeader(THeader &value)

Assign a value to Header data member.

bool IsId(void) const

Check if variant Id is selected.

bool IsString(void) const

Check if variant String is selected.

bool IsReal(void) const

Check if variant Real is selected.

vector< CRef< CSeqTable_column > > TColumns

bool IsInt(void) const

Check if variant Int is selected.

bool IsBytes(void) const

Check if variant Bytes is selected.

void SetData(TData &value)

Assign a value to Data data member.

bool IsSetData(void) const

row data Check if a value has been assigned to Data data member.

const TInt & GetInt(void) const

Get the variant data.

const TString & GetString(void) const

Get the variant data.

const TData & GetData(void) const

Get the Data member data.

where boath are integers</td > n< td ></td > n</tr > n< tr > n< td > tse</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> TSE option controls what blob is orig

<!DOCTYPE HTML >< html > n< header > n< title > PubSeq Gateway Help Page</title > n< style > n table

constexpr bool empty(list< Ts... >) noexcept

const struct ncbi::grid::netcache::search::fields::SIZE size

const GenericPointer< typename T::ValueType > T2 value

void ApplyToTable(CRef< CSeq_table > table, const string &field, const string &val, edit::EExistingText existing_text)

bool MatchColumnName(string name1, string name2)

void RemoveFromTable(CRef< CSeq_table > table, const string &field)

void AddValueToColumn(CRef< objects::CSeqTable_column > column, string value, size_t row, edit::EExistingText existing_text)

void CopyTableColumns(CRef< CSeq_table > table, const string &field1, const string &field2, edit::EExistingText existing_text)

CRef< objects::CSeqTable_column > AddIntColumnToTable(CRef< objects::CSeq_table > table, string label)

CRef< objects::CSeqTable_column > FindSeqTableColumnByName(CRef< objects::CSeq_table > values_table, string column_name)

void RemoveTableRowsThatDoNotMatchStringConstraint(CRef< CSeq_table > table, const string &field, CRef< edit::CStringConstraint > string_constraint)

bool RemoveSeqTableColumnByName(CRef< objects::CSeq_table > table, string column_name)

USING_SCOPE(ncbi::objects)

void AddValueToTable(CRef< objects::CSeq_table > table, string subtype_name, string value, size_t row, edit::EExistingText existing_text)

void ConvertTableColumns(CRef< CSeq_table > table, const string &field1, const string &field2, edit::EExistingText existing_text)

bool IsOrgColumnName(string name)

CRef< objects::CSeqTable_column > AddStringColumnToTable(CRef< objects::CSeq_table > table, string label)

void SwapTableColumns(CRef< CSeq_table > table, const string &field1, const string &field2)

bool QualifierNamesAreEquivalent(string name1, string name2)

void RemoveRowsFromTable(CRef< CSeq_table > table, const vector< size_t > &rows)

void RemoveRowsFromColumn(CRef< CSeqTable_column > col, const vector< size_t > &rows)

void FillShortColumns(CRef< objects::CSeq_table > values_table)

void SetColumnValue(CRef< objects::CSeqTable_column > col, string val)

int CountColumnValueConflicts(CRef< CSeqTable_column > orig_col, CRef< CSeqTable_column > new_col)

bool IsOrgModNoteName(const string &name)

bool IsSubSourceNoteName(const string &name)

#define row(bind, expected)

bool AddValueToString(string &str, const string &value, EExistingText existing_text)

Add text to an existing string, using the "existing_text" directive to combine new text with existing...

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