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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/seqlocinfo_8cpp_source.html below:

NCBI C++ ToolKit: src/objects/seq/seqlocinfo.cpp Source File

(frame < -3 || frame > 3) {

std::out_of_range(

);

(*maskinfo)->GetFrame()));

retval.push_back(sli);

retval->AddInterval((*mask)->GetSeqId(),

(*mask)->GetInterval().GetFrom(),

(*mask)->GetInterval().GetTo(),

(*mask)->GetStrand());

(retval->CanGet() && !retval->Get().empty()) {

ncbi::TMaskedQueryRegions mask

structure for seqloc info

const objects::CSeq_id & GetSeqId() const

ETranslationFrame m_Frame

objects::ENa_strand GetStrand() const

Convert the frame to a strand.

bool operator==(const CSeqLocInfo &rhs) const

Collection of masked regions for a single query sequence.

CRef< objects::CPacked_seqint > ConvertToCPacked_seqint() const

Converts this object to a CPacked_seqint (this is the convention used to encode masking locations in ...

bool HasNegativeStrandMasks() const

Returns true if there are masks on the negative strand.

TMaskedQueryRegions RestrictToSeqInt(const objects::CSeq_interval &location) const

Return a new instance of this object that is restricted to the location specified.

static const char si[8][64]

static const char location[]

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

void Reset(void)

Reset reference object.

bool NotEmpty(void) const

TThisType & SetToOpen(position_type toOpen)

TThisType IntersectionWith(const TThisType &r) const

position_type GetToOpen(void) const

CRange< TSeqPos > TSeqRange

typedefs for sequence ranges

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

TFrom GetFrom(void) const

Get the From member data.

ENa_strand

strand of nucleic acid

bool CanGetStrand(void) const

Check if it is safe to call GetStrand method.

const TId & GetId(void) const

Get the Id member data.

TFrom GetFrom(void) const

Get the From member data.

TStrand GetStrand(void) const

Get the Strand member data.

TTo GetTo(void) const

Get the To member data.

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

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