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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/seqid__comp_8hpp_source.html below:

1 #ifndef OBJTOOLS_ALNMGR___SEQID_COMP__HPP 2 #define OBJTOOLS_ALNMGR___SEQID_COMP__HPP 51 template

typename

TSeqIdPtr>

63 template

typename

TSeqIdPtr>

74 if

( !l_bioseq_handle ) {

76 string

(

"Seq-id cannot be resolved: "

)

80 if

( !r_bioseq_handle ) {

82 string

(

"Seq-id cannot be resolved: "

)

86 return

l_bioseq_handle < r_bioseq_handle;

bool operator()(TSeqIdPtr left_seq_id, TSeqIdPtr right_seq_id) const

CSeqIdBioseqHandleComp(CScope &scope)

bool operator()(TSeqIdPtr left_seq_id, TSeqIdPtr right_seq_id) const

Include a standard set of the NCBI C++ Toolkit most basic headers.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

const string AsFastaString(void) const

int CompareOrdered(const CSeq_id &sid2) const

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

USING_SCOPE(objects)

Implementation includes.

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