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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/seqgraphic__widget_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/seq_graphic/seqgraphic_widget.cpp Source File

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wxWindow*

=

;

wxWindow* parent =

;

(from < (

)1 || to > (

)

) {

=

;

(from > 0) from -= 1;

(to > (

)

) to =

;

(from + 1 >= to) {

wxEvtHandler* obj =

wxEvtHandler*

(evt.GetEventObject());

wxEvtHandler* obj =

wxEvtHandler*

(evt.GetEventObject());

wxEvtHandler* obj =

wxEvtHandler*

(evt.GetEventObject());

wxEvtHandler* obj =

wxEvtHandler*

(evt.GetEventObject());

tip_id =

->GetTipInfo().GetTipID();

wxEvtHandler* obj =

wxEvtHandler*

(evt.GetEventObject());

wxEvtHandler* obj =

wxEvtHandler*

(evt.GetEventObject());

wxEvtHandler* obj =

wxEvtHandler*

(evt.GetEventObject());

(dlg.ShowModal() == wxID_OK) {

->SetDirty(

);

srand(

(time(

)));

= rand() % 256;

= rand() % 256;

= rand() % 256;

(dlg.ShowModal() == wxID_OK) {

(iter != sel.

())

range_pos.

((*iter).GetFrom(), (*iter).GetTo());

dlg.

(

);

srand(

(time(

)));

= rand() % 256;

= rand() % 256;

= rand() % 256;

(dlg.ShowModal() == wxID_OK) {

.Enable(

);

.Enable(

);

(dlg.ShowModal() == wxID_OK) {

range(marker->GetPos(), marker->GetExtendedPos());

(dlg.ShowModal() == wxID_OK) {

wxWindow*

=

;

wxWindow* parent =

;

center.

((marker->GetPos() + marker->GetExtendedPos())/2.0, 1.0);

mark_pos = marker->GetPos();

(half_r > mark_pos) {

(half_r > max_r - mark_pos) {

half_r = max_r - mark_pos;

( !marker_id.empty() ) {

flag =

->IsAjdustRulerToSelection();

->SetAjdustRulerToSelection( !flag );

->SetDirty(

);

flag =

->IsAjdustRulerToSelection();

.Enable(

);

.Enable(

);

dlg.SetTitle(

(

));

(dlg.ShowModal() == wxID_OK ) {

(track_title.empty()) {

dlg.

(

(

));

=

;

(dlg.ShowModal() == wxID_OK ) {

(track_title.empty()) {

(

);

vector<string> annots;

p_track->

(track_key, annots, track_title,

, filter, sub_key);

(dlg.ShowModal() == wxID_OK ) {

( !track_name.empty() ||

(

,

wxPoint pos = ScreenToClient(event.GetPosition());

wxPoint& pos,

wxSize&

,

, m_SequenceGotoDlg(

)

, m_MarkerInfoDlg(

)

(half_r > mark_pos)

(half_r > max_r - mark_pos)

half_r = max_r - mark_pos;

(coll.

()) {

(hit_marker.empty()) {

cmd_reg.

(sRulerPopupMenuNotOnMarker);

cmd_reg.

(sRulerPopupMenuOnMarker);

wxMenu* root = cmd_reg.

(sFeatPanePopupMenu);

unique_ptr<wxMenu> editorMenu(

->CreateContextMenu(

));

(editorMenu.get()) {

(*root, *editorMenu);

wxMenu* track_menu =

wxMenu;

(

.length() > 50) {

root->Append( wxID_SEPARATOR,

(

) );

(

(

,

,

)==

) {

marker_info.

= m_iter->first;

marker_info.

= m_iter->second->GetLabel();

marker_info.

= m_iter->second->GetPos() + 1;

m_iter->second->GetPos());

( !coords.

().empty() ) {

.m_Acc = (*iter)->GetTitle();

((*iter)->CanGetPos_mapped()) {

.m_Hgvs = (*iter)->GetHgvs_position();

(

.m_Hgvs.find(

) == 0) {

.m_LocRef =

;

.m_LocRef =

;

.m_Seq = (*iter)->GetSequence();

vec.push_back(

);

info_vec.push_back(marker_info);

assembly =

->GetFeaturePanel()->GetDS()->GetAssembly();

(!assembly.empty())

vector<IEditorFactory*> factories;

(vector<IEditorFactory*>, it, factories) {

(sel_objs.empty())

(

&item : sel_objs)

objs.emplace_back(*ofeat, bsh.GetSeq_entry_Handle());

CEvent - generic event implementation TODO TODO - Attachments.

void SetAssembly(const string &assembly)

static const CTrackTypeInfo & GetTypeInfo()

CHGVS_Coordinate_Set –.

CLayoutTrack * GetParentTrack()

virtual string GetFullTitle() const

get a more meaningful title.

CRef< CHGVS_Coordinate_Set > GetCoordinates(const CSeq_id &id, TSeqPos pos, TSeqPos window=kSearchWindow)

position_type GetTo() const

TRangeVector::const_iterator const_iterator

const_iterator end() const

TThisType & CombineWith(const TRange &r)

bool Contains(const TRange &r) const

position_type GetFrom() const

TThisType & Subtract(const TRange &r)

const_iterator find(position_type pos) const

class CRgbaColor provides a simple abstraction for managing colors.

TSeqPos GetSequenceLength() const

objects::CBioseq_Handle GetBioseqHandle(void) const

Get the underlying bioseq handle.

list< CRef< CSeqGlyph > > TObjects

void SaveSettings(bool clear_themes=false)

const string & GetMarkerId() const

namespace ncbi::objects::

bool GetRange(long &from, long &to) const

void SetFocusToInputBox()

virtual bool Show(bool show=true)

list< CRef< CTempTrackProxy > > TTrackProxies

const string & GetKey() const

const TFactoryMap & GetTrackFactories() const

CTrackConfigManager inline methods.

static const CTrackTypeInfo & GetTypeInfo()

CTrackContainer - a track container in the form of layout track.

void ExpandAll(bool expand)

expand or collapse this track and its subtracks recursively.

virtual void RenameChildTrack(int order, const string &new_name)

Rename a child track.

const TTrackProxies & GetSubtrackProxies() const

CTrackContainer inline methods.

CTrackProxy * AddNewTrack(const string &track_key, const CTrackProxy::TAnnots &annots, const string &disp_name, const string &name="", const string &filter="", const string &sub_key="")

Add a new empty track proxy.

CTrackConfigManager * GetConfigMgr()

virtual void MoveTrackToTop(int order)

move a track up by 1.

virtual void RemoveTrack(int order, bool immediately=true)

completely remove a track from the hierachical tree.

virtual void MoveTrackToBottom(int order)

move a track down by 1.

virtual void CloneTrack(int order, const string &track_tile)

Duplicate an existing track.

CTrackProxy data structure contains information about the position of a track in its parent scope,...

const string & GetId() const

CUICommandRegistry is a centralized registry where all application commands should be registered.

static CUICommandRegistry & GetInstance()

the main instance associated with the application

wxMenu * CreateMenu(const SwxMenuItemRec *items)

create a menu from a static definition (see WX_*_MENU macros)

int RegisterCommand(CUICommand *cmd)

assumes ownership of the given object returns a command id (useful when registry is used for auto id ...

wxMenuItem * AppendMenuItem(wxMenu &menu, TCmdID cmd_id) const

void SetViewport(const TVPRect &vp)

void SetSeqRange(TSeqPos from, TSeqPos to)

void SetConfig(CRef< CSeqGraphicConfig > cfg)

vector< SMarkerInfo > SMarkerInfoVec

virtual bool Show(bool show=true)

void UpdateMarker(const SMarkerInfoVec &info_vec)

string GetMarkerName() const

void SetMarkerName(const string &name)

TSeqPos GetMarkerPos() const

void SetMarkerRange(TSeqRange range)

void SetDlgTitle(const string &title)

const CRgbaColor GetMarkerColor() const

void SetMarkerPos(TSeqPos pos)

void SetMarkerColor(const CRgbaColor &color)

TSeqRange GetMarkerRange() const

void SetMarkerName(const string &name)

string GetMarkerName() const

void SetTrackName(const wxString &name)

wxString GetTrackName() const

void SetMsg(const wxString &msg)

wxString GetAnnots() const

wxString GetSubtype() const

void InitTrackTypes(const CTrackConfigManager::TFactoryMap &factories)

wxString GetTrackFilter() const

wxString GetTrackType() const

wxString GetTrackName() const

Undo/Redo interface for editing operations.

void WidgetsData_RegisterCommands(CUICommandRegistry &cmd_reg, wxFileArtProvider &provider)

Register standard commands defined in this file and wxWidgets headers.

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Info(CExceptionArgs_Base &args)

void SetModelLimitsRect(const TModelRect &R)

void SetViewport(const TVPRect &R)

TVPRect & GetViewport(void)

void SetScale(TModelUnit scale_x, TModelUnit scale_y, TModelPoint p_center)

void SetScaleRefPoint(TModelUnit scale_x, TModelUnit scale_y, TModelPoint p_ref)

void ZoomRect(const TModelRect &r)

TModelRect & GetModelLimitsRect(void)

void SetAdjustmentPolicy(int adjust_x, int adjust_y)

TModelUnit GetMinScaleY(void) const

void EnableZoom(bool en_x, bool en_y)

void SetVert(T bottom, T top)

void SetVisibleRect(const TModelRect &R)

TModelRect & GetVisibleRect(void)

void SetMinScaleX(TModelUnit scale)

TModelUnit GetMinScaleX(void) const

TModelUnit GetScaleY(void) const

void SetHorz(T left, T right)

CGlPoint< TModelUnit > TModelPoint

void SetOriginType(EOriginType type_x, EOriginType type_y)

void GetExtensionAsInterface(const string &ext_point_id, vector< CIRef< I > > &interfaces)

GetExtensionAsInterface() is a helper function that extracts all extensions implementing the specifie...

vector< CConstRef< CObject > > TConstObjects

EDialogReturnValue NcbiMessageBox(const string &message, TDialogType type=eDialog_Ok, EDialogIcon icon=eIcon_Exclamation, const string &title="Error", EDialogTextMode text_mode=eRaw)

virtual bool Send(CEvent *evt, EDispatch disp_how=eDispatch_Default, int pool_name=ePool_Default)

Sends an event synchronously.

@ eCmdMoveTip

Left mouse (or equiv) up inside tip area.

@ eCmdZoomTip

search (scroll) window to tip element

@ eCmdTipRemoved

Event fired when a new tip added.

@ eCmdSearchTip

tool tip pinned or unpinned

@ eCmdTipActive

User is interactively moving a tool tip.

@ eCmdTipAdded

Copy currently selected tip text to clipboard.

@ eCmdInfoTip

zoom into tip element

@ eCmdTipInactive

Mouse entered a tip (highlight matching glyph)

@ eCmdSeqGoto

goto sequence position

@ eCmdZoomSeq

Zoom to Selection.

@ eCmdBack

Navigation commands.

@ eDispatch_Default

dispatch until handled at least by one handler

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

position_type GetLength(void) const

bool NotEmpty(void) const

position_type GetToOpen(void) const

TThisType & Set(position_type from, position_type to)

CRange< TSeqPos > TSeqRange

typedefs for sequence ranges

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static void TruncateSpacesInPlace(string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string (in-place)

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

unsigned short GetPort() const

Get the listening port number back.

unsigned short m_Port

TCP port to listen on.

void Stop(void)

Suspend the timer.

string AsSmartString(CTimeSpan::ESmartStringPrecision precision, ERound rounding, CTimeSpan::ESmartStringZeroMode zero_mode=CTimeSpan::eSSZ_SkipZero) const

Transform elapsed time to "smart" string.

void Start(void)

Start the timer.

static const char label[]

void SetFrom(TFrom value)

Assign a value to From data member.

TTo GetTo(void) const

Get the To member data.

TFrom GetFrom(void) const

Get the From member data.

void SetTo(TTo value)

Assign a value to To data member.

const Tdata & Get(void) const

Get the member data.

Tdata & Set(void)

Assign a value to data member.

list< CRef< CHGVS_Coordinate > > Tdata

vector< CEditObject > TEditObjectList

#define EXT_POINT__EDITOR_FACTORY

The blob sat and sat key Both must be positive integers</td > n< td > Non empty string The interpretation of the blob id depends on a processor Cassandra n processor expects the following format

static void text(MDB_val *v)

const struct ncbi::grid::netcache::search::fields::SIZE size

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

static bool GetSeqId(const T &d, set< string > &labels, const string name="", bool detect=false, bool found=false)

#define EVT_SEQ_GOTO_CLOSE(id, fn)

#define EVT_SEQ_GOTO(id, fn)

ViewerWindowBase::OnEditMenu ViewerWindowBase::OnJustification EVT_MENU(MID_SHOW_GEOM_VLTNS, ViewerWindowBase::OnShowGeomVltns) EVT_MENU(MID_FIND_PATTERN

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

SMarkerCoordVec m_CoordVec

int g(Seg_Gsm *spe, Seq_Mtf *psm, Thd_Gsm *tdg)

#define WX_DEFINE_MENU(name)

New macros for defining menus for use with CUICommandRegistry.

#define WX_SUBMENU(label)

#define WX_MENU_SEPARATOR_L(label)

#define WX_MENU_ITEM(cmd)

#define WX_MENU_CHECK_ITEM(cmd)

#define WX_MENU_SEPARATOR()

#define EVT_MARKER_INFO_CLOSE(id, fn)

#define EVT_REMOVE_ALL_MARKERS(id, fn)

#define EVT_REMOVE_MARKER(id, fn)

vector< SMarkerCoord > SMarkerCoordVec

void Merge(wxMenu &menu_1, const wxMenu &menu_2)

merges all items form menu_2 into menu_1, preserving the structure if possible

wxString ToWxString(const string &s)

string ToStdString(const wxString &s)

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