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NCBI C++ ToolKit: src/gui/widgets/seq_graphic/seqgraphic_pane.cpp Source File

(

*

(arg)) !=

;

(pos != string::npos) {

, m_BackForwardPos(0)

, m_MouseMode(eMouse_Idle)

, m_MarkerHandlerIndex(0)

, m_VectorPane(

)

#ifdef ATTRIB_MENU_SUPPORT

->AddString(

);

->AddString(

);

m_GlRenderer =

;

GetClientSize(&w, &h);

b_shift = wxGetKeyState(WXK_SHIFT);

(event.GetKeyCode()) {

(wxGetKeyState(wxKeyCode(

)) ||

wxGetKeyState(wxKeyCode(

)) ||

wxGetKeyState(wxKeyCode(

)) )

rect_select =

.ShiftDown();

inc_select =

.CmdDown();

(last_hit_glyph && !inc_select && !rect_select ) {

}

(inc_select) {

(last_hit_glyph && last_hit_glyph->

(pos)) {

( !HasCapture() ) {

(wxGetKeyState(wxKeyCode(

)) ||

wxGetKeyState(wxKeyCode(

)) ||

wxGetKeyState(wxKeyCode(

)) )

wxPoint pos =

.GetPosition();

}

(last_hit_glyph && last_hit_glyph->

()) {

(wxGetKeyState(wxKeyCode(

)) ||

wxGetKeyState(wxKeyCode(

)) ||

wxGetKeyState(wxKeyCode(

)) )

shift =

.GetWheelRotation()/4;

wxPoint pos =

.GetPosition();

track_name =

;

(!glyph_o.

()) {

& obj = *glyph_o;

track_name =

;

( !glyphs.empty() ) {

glyph = glyphs.front();

(iter->second->IsRemoved())

;

img_height =

(220, img_height);

(last_hit_glyph && !last_hit_glyph->IsSelected()) {

mouse_x,

mouse_y)

objs.push_back(sel_obj);

glClearColor(1, 1, 1, 0);

glClear(GL_COLOR_BUFFER_BIT | GL_DEPTH_BUFFER_BIT);

(m_GlRenderer !=

) {

(rdebug ==

) {

(

<<

);

gl.

(GL_SRC_ALPHA, GL_ONE_MINUS_SRC_ALPHA);

(iter->second->IsRemoved())

;

m_RenderMs =

.Elapsed();

gl.

(GL_SRC_ALPHA, GL_ONE_MINUS_SRC_ALPHA);

(iter->second->IsRemoved())

;

vert_offset = title_height + 2.0f;

(title.size() > 0)

gl.

(0, vp_height-vert_offset, vp_width, vert_offset);

gl.

(0, vp_width, 0, vert_offset, -1.0, 1.0);

gl.

(0.9f, 0.9f, 0.9f);

gl.

(0.0f, 0.0f,

(vp_width),

(vert_offset));

gl.

(0.0f, 0.0f, 0.0f);

the_point->ChangeSwitchPoint(marker_pos, 0);

}

(std::exception&) {

(

<<

);

vector<TipLocation>::const_iterator curr_tip = tip_rects.begin();

(curr_tip != tip_rects.end() && curr_tip->TipID !=

) {

(glyph && curr_tip != tip_rects.end()) {

glyph->GetPosInWorld(glyph_pos);

glyph_rect.

(glyph_pos.

());

glyph_rect.

(glyph_pos.

());

glyph_rect.

(glyph_pos.

() + glyph->GetWidth());

glyph_rect.

(glyph_pos.

() + glyph->GetHeight());

gl.

(1.0f, 0.0f, 0.0f, 0.4f);

gl.

(GL_QUADS);

gl.

(x_right, glyph_rect.

() - band_w, 0.0);

gl.

(x_left, glyph_rect.

() - band_w, 0.0);

gl.

(x_left - band_w_x, glyph_rect.

(), 0.0);

gl.

(x_right + band_w_x, glyph_rect.

(), 0.0);

gl.

(x_left, glyph_rect.

() - band_w, 0.0);

gl.

(x_left - band_w_x, glyph_rect.

() - band_w, 0.0);

gl.

(x_left - band_w_x, glyph_rect.

(), 0.0);

gl.

(x_right + band_w_x, glyph_rect.

(), 0.0);

gl.

(x_right + band_w_x, glyph_rect.

() - band_w, 0.0);

gl.

(x_right, glyph_rect.

() - band_w, 0.0);

gl.

(x_left - band_w_x, glyph_rect.

() + band_w, 0.0);

gl.

(x_right + band_w_x, glyph_rect.

() + band_w, 0.0);

no_connector =

;

(tip_rect_m.

() < glyph_rect.

()) {

(temp.

()) {

}

(tip_rect_m.

() > glyph_rect.

()) {

(temp.

()) {

}

(tip_rect_m.

() > glyph_rect.

()) {

(temp.

()) {

}

(tip_rect_m.

() < glyph_rect.

()) {

(temp.

()) {

no_connector =

;

( !no_connector ) {

off_x = dist < small_num ? len_pix : dy * len_pix / dist;

off_y = dist < small_num ? 0.0 : dx * len_pix / dist;

(

(off_x) < small_num) {

start_pnt1.

= start_pnt2.

= start_pnt.

;

start_pnt1.

= start_pnt.

- len_pix * 0.5;

start_pnt2.

= start_pnt.

+ len_pix * 0.5;

}

(start_pnt2.

> t_v.

()) {

shift = t_v.

() - start_pnt2.

;

start_pnt1.

+= shift;

start_pnt2.

+= shift;

}

(

(off_y) < small_num) {

start_pnt1.

= start_pnt2.

= start_pnt.

;

start_pnt1.

= start_pnt.

-

->ScreenToSeq(len_pix) * 0.5;

start_pnt2.

= start_pnt.

+

->ScreenToSeq(len_pix) * 0.5;

}

(start_pnt2.

> t_h.

()) {

shift = t_h.

() - start_pnt2.

;

start_pnt1.

+= shift;

start_pnt2.

+= shift;

start_pnt1.

= start_pnt.

;

start_pnt2.

= start_pnt.

;

start_pnt1.

= start_pnt.

+ off_y;

start_pnt2.

= start_pnt.

+

->ScreenToSeq(off_x);

gl.

(1.0f, 1.0f, 0.65f, 0.4f);

->DrawTriangle(start_pnt1.

, start_pnt1.

,

start_pnt2.

, start_pnt2.

,

end_pnt.

, end_pnt.

);

gl.

(GL_LINE_SMOOTH);

gl.

(0.0f, 0.0f, 0.0f, 0.9f);

->DrawLine(start_pnt1.

, start_pnt1.

, end_pnt.

, end_pnt.

);

->DrawLine(start_pnt2.

, start_pnt2.

, end_pnt.

, end_pnt.

);

gl.

(0.0f, 0.0f, 0.0f, 1.0f);

gl.

(GL_LINE_STIPPLE);

gl.

(GL_LINES);

gl.

(GL_LINE_STIPPLE);

(r_cur != r_old) {

fingerprint = 0;

ds_fingerprint = 0;

subtype, fingerprint, ds_fingerprint, ds_name, &

->

());

tip_rect_m.

(tip_rect.y - win_rect.y -

(win_rect.GetHeight() - vp_rect.

()) + offset_y);

tip_rect_m.

(tip_rect_m.

() + tip_rect.GetHeight());

need_shift =

;

glyph->GetPosInWorld(glyph_pos);

glyph_rect.

(glyph_pos.

());

glyph_rect.

(glyph_pos.

());

glyph_rect.

(glyph_pos.

() + glyph->GetWidth());

glyph_rect.

(glyph_pos.

() + glyph->GetHeight());

( !tip_rect_m.

(glyph_rect) ) {

need_shift =

;

need_shift =

;

(tip_rect_m.

() + tip_rect_m.

() < vis_rect.

() + vis_rect.

()) {

shift = obj_r.

() - target_pos;

shift = obj_r.

() - target_pos;

fingerprint = 0;

ds_fingerprint = 0;

subtype, fingerprint, ds_fingerprint, ds_name, &

->

());

(last_hit_glyph) {

:

(

);

-1;

GetClientSize().y - 1 - y;

:

(

);

-1;

:

(

);

-1;

(mfo.HasMappedFeat()) {

& feat = mfo.GetMappedFeat().GetOriginalFeature();

range = mfo.GetRange();

(last_hit_glyph) {

srand(

(time(

)));

(last_hit_glyph) {

(last_hit_glyph->NeedTooltip(pos, *tooltip, title)) {

(tip_id.empty()) {

(last_hit_glyph) {

glyph->

(pos, *tooltip, tip_title);

.SetTipText(tooltip->Render());

.SetTitleText(tip_title);

.SetTipID(tip_id);

.SetToolTipOptions(0);

(

));

url_handler.

(href.ToStdString());

.push_back(iter->GetDescription());

( !iter->second->IsRemoved() ) {

&

,

marker = iter->second;

pos = marker->GetPos();

(iter->second->IsRemoved())

;

(iter->second->m_Handler.HitMe()) {

marker.

(iter->second.GetPointer());

(intervals.size() == 0)

t_dist = marker_pos >

? marker_pos -

:

- marker_pos;

(near_dist > t_dist) {

f_dist = marker_pos >

? marker_pos -

:

- marker_pos;

(near_dist > f_dist) {

(marker_pos >=

&& marker_pos <=

) {

(marker_pos <

) {

(!neg_strand)

;

(marker_pos >

) {

(neg_strand)

;

(pre == INT_MAX) pre = near_val;

(marker_pos == near_val) {

have_next = (iter + 1) != intervals.end();

have_prev = iter != intervals.begin();

(marker_pos ==

&&

==

&& have_next) {

marker_pos = (iter + 1)->GetFrom();

}

(marker_pos ==

) {

}

(have_next) {

marker_pos = (iter + 1)->GetTo();

}

(marker_pos ==

) {

}

(have_next) {

marker_pos = (iter + 1)->GetFrom();

(marker_pos ==

&&

==

&& have_prev) {

marker_pos = (iter - 1)->GetTo();

}

(marker_pos ==

) {

}

(have_prev) {

marker_pos = (iter - 1)->GetFrom();

}

(marker_pos ==

) {

}

(have_prev) {

marker_pos = (iter - 1)->GetTo();

(neg_strand) marker_pos = pre;

marker_pos =

;

(neg_strand) marker_pos =

;

marker_pos = pre;

(vis_r.

() > marker_pos || vis_r.

() < marker_pos) {

vis_r.

() + (marker_pos - center_x));

( marker_pos >= range.

() && marker_pos <= range.

() );

str_l =

.size();

.reserve(str_l + 2);

(

= 0;

< str_l; ++

) {

& curr_char =

[

];

(curr_char ==

|| curr_char ==

) {

.append(1, curr_char);

(iter->second->IsRemoved())

;

vector<string>

;

e_size = e_tokens.size();

vector<string>

;

(

.size() == 1) {

pos = NStr::StringToNumeric<TSeqPos>(

[0]);

(

.size() == 2) {

range(NStr::StringToNumeric<TSeqPos>(

[0]),

NStr::StringToNumeric<TSeqPos>(

[1]));

(iter->second->IsRemoved()) {

(rc_ruler.

(vp_x, vp_y)) {

}

(rc_feat.

(vp_x, vp_y)) {

(sel_glyphs.size() == 1) {

glyph = sel_glyphs.front();

}

(iter->second->IsRemoved()) {

iter->second->SetPos(0);

iter->second->SetRemoved(

);

iter->second->m_Handler;

&

,

iter->second->SetRemoved(

);

wxPoint pos = ScreenToClient(event.GetPosition());

std::invoke_result< _Fty, ICanceled & >::type GUI_AsyncExec(_Fty &&_Fnarg, const wxString &msg=wxT("Accessing network..."))

const string & GetParentTrackName() const

bool HasMatches(const CObject &object, objects::CScope &scope) const

CEvent - generic event implementation TODO TODO - Attachments.

virtual const objects::CSeq_loc & GetLocation(void) const

access the position of this object.

CConfigurableItems - a static list of items that can be configured.

CMappedFeatOrObject FindText(const string &text, bool match_case)

void ShowConfigureTracksDlg(const string &category)

virtual void ResetSearch()

CGlAttrGuard - guard class for restoring OpenGL attributes.

const CCachedTipHandle & m_TipHandle

CGlyphSearchVisitor(const CCachedTipHandle &handle, CScope &scope)

TSelectedGlyphs Search(CSeqGlyph *glyph)

virtual bool Visit(CSeqGlyph *glyph)

list< CWeakRef< CSeqGlyph > > TSelectedGlyphs

void Render(CGlPane &pane)

void SetHost(ITrackHandlerHost *host)

CLayoutTrackHandler inline methods.

virtual void SetPane(CGlPane *pane)

virtual string GetFullTitle() const

get a more meaningful title.

void Render(CGlPane &Pane, ERenderingOption option=eActiveState)

void SetSelection(const TRangeColl &C, bool bRedraw)

void ResetSelection(bool bRedraw)

const TRangeColl & GetSelection() const

void SetHost(ISelHandlerHost *host)

void SetOrientation(EOrientation orient)

Help class to manage markers.

void SetColor(const CRgbaColor &color)

void SetMarkerType(CSeqMarkHandler::EMarkerType t)

void SetExtendedPos(TModelUnit pos)

void SetRange(TSeqRange range)

CSeqMarkHandler m_Handler

void SetPos(TModelUnit pos)

void SetLabel(const string &label)

virtual void SetHost(IMouseZoomHandlerHost *pHost)

virtual void SetMode(EMode mode)

virtual void Render(CGlPane &Pane)

static void ParseSignature(const string &sig, objects::CSeq_id_Handle &sih, TSeqPos &from, TSeqPos &to, EObjectType &type, int &subtype, Uint4 &fingerprint, Uint4 &ds_fingerprint, string &ds_name, objects::CScope *scope)

parse signature with data source info.

bool operator()(const CObject *arg) const

CRenderingContext offers the basic context and utility methods for rendering layout objects in featur...

class CRgbaColor provides a simple abstraction for managing colors.

objects::CScope & GetScope(void) const

Get the scope from the handle.

TSeqPos GetSequenceLength() const

string GetAcc_Best() const

this is more suitable for display purposes since the returned string will not always be good to recon...

static const CFeatList * GetFeatList()

class CSeqGlyph defines an interface that wraps a rectilinear abstract object.

virtual bool IsClickable() const

Query if this glyph is clickable.

virtual void GetTooltip(const TModelPoint &, ITooltipFormatter &tt, string &t_title) const

Get the tooltip if available.

virtual bool OnLeftDblClick(const TModelPoint &)

virtual TSeqRange GetRange(void) const

get the total range of this object.

virtual bool OnLeftDown(const TModelPoint &)

virtual bool Accept(IGlyphVisitor *visitor)

Interface for accepting an IGlyphVisitor.

const CSeqGlyph * GetParent(void) const

list< CRef< CSeqGlyph > > TObjects

virtual bool OnContextMenu(wxContextMenuEvent &event)

list< CConstRef< CSeqGlyph > > TConstObjects

bool IsAjdustRulerToSelection() const

CRef< CGlTextureFont > GetTitleFont() const

void LoadSettings()

update the cached settings.

void SaveSettings(bool clear_themes=false)

CConstRef< CSeqGlyph > x_GetOnlyOneSelectedGlyph()

virtual void SMHH_SetSeqMark(TSeqPos mark) override

The derived class may choose do something differently when marker position is changed.

void OnTipRemoved(const string &tip_id)

string GetMarkers() const

get/set markers stored as a string.

void OnTipAdded(const string &tip_id)

void x_RemoveMarker(const string &id)

virtual TModelUnit SMHH_GetModelByWindow(int z, EOrientation orient) override

CSeqMarkHandler & x_GetDefaultMarker()

CConstRef< CSeqGlyph > GetSelectedLayoutObj()

void OnMiddleDown(wxMouseEvent &event)

void NextPrevSplice(EDirection dir)

CRef< CSeqGraphicConfig > m_ConfigSettings

void x_RenderTooltipConnector()

CSeqGraphicWidget * x_GetParent()

virtual void LTH_OnLayoutChanged() override

provides mouse coords in OpenGL viewport coord system

virtual void MZHH_SetScale(TModelUnit scale, const TModelPoint &point) override

@ eMouse_Idle

no button down

@ eMouse_RectSelect

with SHIFT key down

@ eMouse_IncRectSelect

with SHIFT and CTRL key down

@ eMouse_IncSelect

with CTRL key down

@ eMouse_Pan

left click and drag

@ eMouse_Down

left button down, not sure what to do yet

string GetNewMarkerName()

const TRangeColl & GetRangeSelection(void) const

virtual void UpdateVectorLayout() override

CConstRef< CMarker > GetMarker(const string &id)

TModelUnit GetHeight()

class CSeqGraphicPane

virtual ~CSeqGraphicPane()

virtual TModelPoint THH_GetModelByWindow(const wxPoint &pt) override

void SetRangeSelection(const TRangeColl &ranges)

void x_NotifyWidgetRangeChanged()

CTooltipInfo m_TooltipInfo

bool CanGoBack(void) const

virtual void MZHH_ZoomRect(const TModelRect &rc) override

virtual void PostDialogShow() override

Post-processing after showing a dialog.

CSeqGraphicPane(CSeqGraphicWidget *parent)

void SelectOnlyThisObject(const CSeqGlyph *glyph, int mouse_x, int mouse_y)

virtual const TVPRect & GetViewportRect() const override

virtual TVPUnit MZHH_GetVPPosByY(int y) const override

converts window coord to Viewport coord

void OnMouseCaptureLost(wxMouseCaptureLostEvent &)

void RemoveMarker(const string &marker_id)

void x_NotifyWidgetSelChanged()

void InitDataSource(SConstScopedObject &obj)

void SetViewportWidth(TSeqPos from, TSeqPos to, TVPUnit vp_width)

void SelectSeqLoc(const objects::CSeq_loc *loc)

TSeqRange FindText(const string &text, bool match_case)

bool CanGoForward(void) const

bool AllJobsFinished() const

virtual void SMHH_OnReset(const string &id) override

The derived class may need to do something differently when a marker gets reset, such as remove the m...

void AddPointMarker(const string &name, TSeqPos pos, const CRgbaColor color)

void GetFeatureNames(vector< string > &names)

void x_ChangeSwitchPoint()

void AdjustViewPort()

Potential actions include loading data and generating layouts.

void GetObjectSelection(TConstObjects &objs) const

retrieve the selections from our renderer.

CRef< CSeqGraphicConfig > GetConfig()

virtual void LTH_ZoomOnRange(const TSeqRange &range) override

notifies the host we need to zoom on to a range.

string GetHitMarker() const

CWeakRef< CSeqGlyph > x_GetGlyphByTipId(const string &tip_id)

void SetSeqStart(TSeqPos pos)

void SetInputObject(SConstScopedObject &obj)

void SetSeqStartMarker(const string &id)

bool IsHorizontal() const

void SetSeqStartPoint(TModelPoint point)

virtual void LTH_PopupMenu(wxMenu *menu) override

show track-specific context menu.

void x_RenderRectSelHandler(CGlPane &pane)

Rectangular selection.

virtual void PreDialogShow() override

Prepare for showing a dialog.

bool m_VectorPane

If true pane is only for creating vector graphics - ignore other draw events.

CWeakRef< CSeqGlyph > m_LastHitGlyph

last hit glyph.

virtual void x_Render() override

Draw the GL window.

CRef< CSGSequenceDS > m_DS

void OnMouseWheel(wxMouseEvent &event)

int m_MarkerHandlerIndex

Marker handler index among all registered handlers.

void SetHorizontal(bool b_horz, bool b_flip)

virtual void ResetSearch() override

TRangeVec m_BackForwardHistory

void OnLeftDblClick(wxMouseEvent &event)

void UpdateConfig()

the config object just changed. Do what is necessary.

bool AllTracksCreated() const

virtual TModelUnit MZHH_GetScale(EScaleType type) override

CMouseZoomHandler m_MouseZoomHandler

void ResetObjectSelection()

virtual void Update(void) override

void GetCurrentObject(int mouse_x, int mouse_y, TConstObjects &objs)

void SelectObject(const CObject *obj, bool verified)

virtual void MZHH_ZoomPoint(const TModelPoint &point, TModelUnit factor) override

CRef< CSeqGraphicRenderer > m_Renderer

virtual void LTH_PushEventHandler(wxEvtHandler *handler) override

CStickyTooltipHandler m_TooltipManager

void AdjustViewPortHeightToImage()

bool m_Title

When rendering vector image, add a title.

virtual CTooltipInfo TTHH_GetTooltip(const wxRect &rect) override

Return the contents to be displayed in the tool tip.

void x_OnPurgeMarkers(CEvent *)

CFeaturePanel * GetFeaturePanel()

void SetExternalGlyphs(const CSeqGlyph::TObjects &objs)

CSGSequenceDS * GetDataSource(void)

virtual int x_GetAreaByVPPos(int vp_x, int vp_y) override

void ResetRangeSelection()

virtual void LTH_ConfigureTracksDlg(const string &category) override

void OnKeyUp(wxKeyEvent &event)

void SaveCurrentRange()

For Back or Forward operations.

void OnLeftUp(wxMouseEvent &event)

bool x_HasDefaultMarker() const

void ModifyMarker(const string &id, const string &label, TSeqPos pos, const CRgbaColor color)

virtual void MZHH_EndOp() override

size_t GetMarkerNum() const

virtual void MZHH_Scroll(TModelUnit d_x, TModelUnit d_y) override

virtual TModelUnit SHH_GetModelByWindow(int z, EOrientation orient) override

virtual TVPPoint GetPortSize(void) override

Get GL view port size.

virtual TSeqPos SMHH_GetSeqMark() const override

If the host needs to dictate/store the marker position, then it needs to return a non (TSeqPos)-1 val...

virtual void SHH_OnChanged() override

ISelHandlerHost implementation.

size_t m_BackForwardPos

position in m_BackForwardHistory

CIRef< ISGDataSourceContext > m_DSContext

bool x_ModifyMarker(CRef< CMarker > &marker, const string &id, const string &label, const CRgbaColor color)

CLinearSelHandler::TRangeColl TRangeColl

virtual CRef< CLayoutTrack > THH_GetLayoutTrack() override

Get the layout track under the current mouse position.

virtual bool TTHH_ProcessURL(const wxString &href) override

Return true if the specified URL has been processed. Used for custom commands.

void DeSelectObject(const CObject *obj)

void SelectLastHitObject(int mouse_x, int mouse_y)

virtual string TTHH_NeedTooltip(const wxPoint &pt) override

Return id of the underlying element to dispaly a tooltip, otherwise "".

CLayoutTrackHandler m_TrackHandler

void OnSearchTip(const string &tip_id, const wxRect &tip_rect)

void OnLeftDown(wxMouseEvent &event)

int GetPopupArea(wxPoint pos)

void OnZoomTip(const string &tip_id, const wxRect &)

void OnKeyDown(wxKeyEvent &event)

virtual void RenderVectorGraphics(int vp_width, int vp_height) override

Render for vector output.

void SetMarkers(const string &markers)

virtual void LTH_PopEventHandler() override

string x_GetCachedTipId(const CSeqGlyph *glyph) const

bool CanZoomSelection(void)

void SetSeqMarker(TModelPoint point)

CLinearSelHandler m_SelHandler

void OnKillFocus(wxFocusEvent &event)

void SetNonAsnInput(const INonAsnTrackData &data)

void OnInfoTip(const string &)

void RenameMarker(const string &id, const string &label)

void x_AddNewMarker(CRef< CMarker > marker, const string &label, const CRgbaColor &color)

void OnMotion(wxMouseEvent &event)

void AddRangeMarker(const string &name, TSeqRange range, const CRgbaColor color)

void OnContextMenu(wxContextMenuEvent &event)

virtual TVPUnit SHH_GetWindowByModel(TModelUnit z, EOrientation orient) override

void UpdateData(TSeqPos from, TSeqPos to)

bool IsObjectSelected(const CObject *obj)

void RenderVectorGraphics()

CGlPane & GetRulerGlPane()

void SetNeedUpdateSelection()

CRef< CSeqGlyph > HitTest(int x, int y)

void SetVertScroll(TModelUnit val)

void ResetObjectSelection(void)

bool HasSelectedObjects() const

void DeSelectObject(const CObject *obj)

void GetObjectSelection(ncbi::TConstObjects &objs) const

CFeaturePanel * GetFeaturePanel()

void SelectObjByRect(const TVPRect &rc)

void SetNonAsnInput(const INonAsnTrackData &data)

void SetExternalGlyphs(const CSeqGlyph::TObjects &objs)

void SetDSContext(ISGDataSourceContext *ds_ctx)

CSeqGraphicRenderer inline methods.

void SetHost(ILayoutTrackHost *host)

void UpdateConfig(CRef< CSeqGraphicConfig > config)

bool AllJobsFinished() const

void SetHorizontal(bool b_horz, bool b_flip, const TVPRect &rc, bool reset_model_limit=false)

void SetInputObject(SConstScopedObject &obj)

const CSeqGlyph::TConstObjects & GetSelectedLayoutObjects()

TSeqPos Screen2Seq(TVPUnit x, TVPUnit y)

pixels to sequence translation.

TSeqPos Screen2SeqWidth(TVPUnit vp)

CGlPane & GetFeatGlPane()

Expose a few GlPanes.

void SelectObject(const CObject *obj, bool verified)

bool AllTracksCreated() const

TModelUnit GetLayoutHeight() const

retrieve the expected height of this widget.

void SetRulerSeqStart(TSeqPos pos)

Ruler Mark.

TSeqRange GetVisibleRange() const

void ZoomOnRange(const TModelRange &range, bool round_to_base=false)

zoom to the given range.

void UpdateVectorLayout()

Class CSeqMarkHandler represents in GUI a single "hairpin" on a sequence bar.

const CRgbaColor & GetColor() const

const string & GetLabel() const

void SetId(const string &id)

TSeqPos GetExtendedPos() const

EMarkerType GetMarkerType() const

void SetLabel(const string &label)

void SetPos(TModelUnit pos)

void SetHost(ISeqMarkHandlerHost *pHost)

namespace ncbi::objects::

@ eWidgetSelectionChanged

a view has been destroyed

@ eWidgetDataChanged

notification from child to parent that the underlying data has changed

@ eWidgetRangeChanged

notification from child to parent that the visible range has changed

Interface for testing cancellation request in a long lasting operation.

Visitor interface for applying any potential actions or algorithms.

virtual const TIntervals & GetIntervals(void) const =0

access sub-intervals (if any).

virtual CConstRef< CObject > GetObject(TSeqPos pos) const =0

access our core component - we wrap an object(s) of some sort.

virtual const objects::CSeq_loc & GetLocation(void) const =0

access the position of this object.

virtual string GetSignature() const =0

return signature for this glyph.

vector< TSeqRange > TIntervals

container_type::const_iterator const_iterator

container_type::iterator iterator

const_iterator begin() const

const_iterator end() const

iterator_bool insert(const value_type &val)

container_type::value_type value_type

const_iterator find(const key_type &key) const

void(*)(CSeq_entry_Handle seh, IWorkbench *wb, const CSerialObject &obj) handler

static vector< string > arr

std::ofstream out("events_result.xml")

main entry point for tests

static const struct name_t names[]

static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)

static DLIST_TYPE *DLIST_NAME() next(DLIST_LIST_TYPE *list, DLIST_TYPE *item)

static const char * str(char *buf, int n)

static const char *const strings[]

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

void swap(NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair1, NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair2)

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

#define NCBI_CATCH(message)

Catch CExceptions as well This macro is deprecated - use *_X or *_XX variant instead of it.

const string & GetMsg(void) const

Get message string.

void Warning(CExceptionArgs_Base &args)

CRef< objects::CSeqMapSwitchPoint > GetSwitchPoints() const

const objects::CSeq_loc & GetLocation(void) const

Access the alignments's remapped location.

static CGlResMgr & Instance()

virtual void Viewport(GLint x, GLint y, GLsizei width, GLsizei height)=0

virtual void Translatef(GLfloat x, GLfloat y, GLfloat z)=0

virtual void Enable(GLenum glstate)=0

virtual void LineStipple(GLint factor, GLushort pattern)=0

Set line stipple pattern: glLineStipple(). Deprecated in gl 3.2+.

CIRef< IRender > GetRenderer(ERenderTarget target)

Returns first renderer in m_Renderers that renders to 'target'.

virtual void Begin(GLenum mode)=0

Start rendering.

CGlPoint< TVPUnit > TVPPoint

virtual void BlendFunc(GLenum sfactor, GLenum dfactor)=0

Options to be used when GL_BLEND is enabled.

void Color3f(GLfloat r, GLfloat g, GLfloat b)

TModelPoint UnProject(TVPUnit m_x, TVPUnit m_y) const

virtual void MatrixMode(GLenum mode)=0

TVPUnit ProjectX(TModelUnit m_x) const

IRender & GetGl()

convenience function for getting current render manager

void Vertex2d(GLdouble x, GLdouble y)

TVPRect & GetViewport(void)

virtual void BeginText(const CGlTextureFont *font, const CRgbaColor &color)=0

Text is drawn is pixel coordinates.

TModelUnit GetOffsetY() const

virtual TModelUnit GetFontDescender() const

virtual void LoadIdentity()=0

TVPUnit ProjectY(TModelUnit m_y) const

virtual void EndText()=0

Pops matrices and attributes after writing text.

TModelUnit UnProjectX(TVPUnit m_x) const

virtual void PopMatrix()=0

CGlPoint< T > CenterPoint() const

virtual void ShadeModel(GLenum mode)=0

Set shade model for default lighting: glShadeModel(GL_FLAT or GL_SMOOTH)

void AddRenderer(CIRef< IRender > rm)

Get/Set Renderer.

bool PtInRect(T x, T y) const

virtual void End()=0

Finish rendering (create buffer and send to renderer)

#define CHECK_GLERROR()

Same as CGlUtils::CheckGlError except the log message will include the name of the function logging t...

TModelUnit UnProjectY(TVPUnit m_y) const

CRange< TModelUnit > TModelRange

TModelUnit GetZoomAllScaleX(void) const

void SetCurrentRenderer(CIRef< IRender > rm)

Set current renderer (rm must already be in m_Renderers)

void Color4f(GLfloat r, GLfloat g, GLfloat b, GLfloat a)

virtual void WriteText(TModelUnit x, TModelUnit y, const char *text, TModelUnit rotate_degrees=0.0)=0

Write text at specified model coords.

virtual TModelUnit TextHeight(void) const

TModelRect & GetVisibleRect(void)

void Vertex3d(GLdouble x, GLdouble y, GLdouble z)

virtual void Disable(GLenum glstate)=0

glDisable()

virtual void Ortho(GLdouble left, GLdouble right, GLdouble bottom, GLdouble top, GLdouble nearVal, GLdouble farVal)=0

virtual void LineWidth(GLfloat w)=0

Set line width for drawing: glLineWidth()

TModelUnit GetMinScaleX(void) const

TModelUnit GetScaleX(void) const

CGlPoint< TModelUnit > TModelPoint

virtual void Rectf(GLfloat x1, GLfloat y1, GLfloat x2, GLfloat y2)=0

Rect() functions also do Begin() and End() (as in OpenGL)

virtual void ColorC(const CRgbaColor &c)=0

Set current color (glColor{3,4}{f,d}{v,})

bool Intersects(const CGlRect &R) const

virtual void PushMatrix()=0

string ToString(bool printAlpha=true, bool uchars=true) const

Return a string representation of the current color.

vector< CConstRef< CObject > > TConstObjects

static CIRef< ITooltipFormatter > CreateTooltipFormatter(ETooltipFormatters)

factory for requested tooltip formatter creation

void Post(CRef< CEvent > evt, EDispatch disp_how=eDispatch_Default, int pool_name=ePool_Default)

Handles an event asynchronously (process and/or dispatch).

#define ON_EVENT(type, id, handler)

static void TokenizeWithEscape(const string &str, const string &delim, vector< string > &tokens, bool remove_escape=false)

Tokenize a string using the delim.

#define END_EVENT_MAP()

Ends definition of Command Map.

#define BEGIN_EVENT_MAP(thisClass, baseClass)

Begins definition of Command Map for CEventHandler-derived class.

virtual void AddListener(CEventHandler *listener, int pool_name=ePool_Default)

Add a listener.

virtual bool Send(CEvent *evt, EDispatch disp_how=eDispatch_Default, int pool_name=ePool_Default)

Sends an event synchronously.

@ eTooltipFormatter_Html

generated table is HTML attributes (no CSS) based, generate NCBI URLs are absolute (recommended for G...

@ eEvent_Message

message from one class to another

@ eDispatch_Default

dispatch until handled at least by one handler

TRange GetTotalRange(void) const

ENa_strand GetStrand(const CSeq_loc &loc, CScope *scope=0)

Returns eNa_strand_unknown if multiple Bioseqs in loc Returns eNa_strand_other if multiple strands in...

bool Empty(void) const THROWS_NONE

Check if CConstRef is empty – not pointing to any object which means having a null value.

TObjectType * GetPointer(void) const THROWS_NONE

Get pointer,.

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

void Reset(void)

Reset reference object.

TRefType Lock(void) const

Lock the object and return reference to it.

void Reset(void)

Reset the containing pointer to null.

bool IsNull(void) const THROWS_NONE

Check if pointer is null – same effect as Empty().

TObjectType * GetPointerOrNull(void) THROWS_NONE

Get pointer value.

uint32_t Uint4

4-byte (32-bit) unsigned integer

position_type GetLength(void) const

bool NotEmpty(void) const

bool IntersectingWith(const TThisType &r) const

TThisType IntersectionWith(const TThisType &r) const

CRange< TSeqPos > TSeqRange

typedefs for sequence ranges

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static SIZE_TYPE Find(const CTempString str, const CTempString pattern, ECase use_case=eCase, EDirection direction=eForwardSearch, SIZE_TYPE occurrence=0)

Find the pattern in the string.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

static string TruncateSpaces(const string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string.

@ eReverseSearch

Search in a backward direction.

@ eCase

Case sensitive compare.

unsigned short GetPort() const

Get the listening port number back.

static const char label[]

void SetFrom(TFrom value)

Assign a value to From data member.

TTo GetTo(void) const

Get the To member data.

TFrom GetFrom(void) const

Get the From member data.

void SetTo(TTo value)

Assign a value to To data member.

static void text(MDB_val *v)

TSeqRange SplitPosOrRange(const string &text)

Defines: CTimeFormat - storage class for time format.

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

static string s_EscapeCommaAndPipe(const string &str)

static string s_GetRandomTipID()

ITooltip Implementation TC_NeedTooltip() and TC_GetTooltip() is evrything needed to show toolitps.

static string s_GetTrackName(const string &tip_id)

static const string kDefaultMarker

static const string kNamedMarker

static const string kCommonTipId

static const string kDefaultMarkerLabel

void SetFocus(CRef< objects::CSeq_entry > entry)

C++ wrappers for the Perl-compatible regular expression (PCRE) library.

wxRect GetScreenRect(const wxWindow &win)

list< STokenInfo > TTokens

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