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NCBI C++ ToolKit: src/gui/widgets/seq_graphic/seqgraphic_conf.cpp Source File

(

);

(

);

&

,

& profile,

& layout,

& label_pos)

, m_CurrColor(

)

, m_CurrProfile(profile)

, m_CurrLayout(layout)

, m_CurrLabelPos(label_pos)

, m_AnnotDepth(eDepth_unknown)

vector<string>::reverse_iterator riter(feat_hierarchy.end());

vector<string>::reverse_iterator rend(feat_hierarchy.begin());

( ; riter != rend; ++riter) {

=

;

& key_n = sub_iter->key;

(key_n ==

) {

}

(key_n ==

) {

}

(key_n ==

) {

sub_order = sub_view.

(

, -1);

(sub_order != -1) {

sub_view.

(

, key_n),

(

& group: group_map) {

(

& sub_group: sub_group_map) {

sub_cat->

(sub_group.second);

&

,

&

,

& deco,

& profile,

&

)

( theme.empty() ||

(

.empty()) {

(

.empty()) {

(profile.empty()) {

(

.empty()) {

label_pos = sub_view.

(

);

(sub_view.

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(sub_view.

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(sub_view.

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label_pos = view.

(

);

data structure holding configuration for a track.

CRef< objects::CCategory > GetCategory(const string &cat_name)

CRef< objects::CCategory > GetSubcategory(const string &cat_name, const string &sub_cat)

void AddCategory(const SCategorySettings &cat)

void AddSubcategory(const string &cat_name, CRef< objects::CCategory > sub_cat)

CGlTextureFont m_LabelFont

CRgbaColor m_UnknownConcordancyColor

TModelUnit m_HeadHeight

absolute size (in pixel)

CRgbaColor m_HighlightColor

CRgbaColor m_FakeEndColor

CRgbaColor m_CombinedPlacementColor

TModelUnit m_OverviewFactor

ratio to bar height

CRgbaColor m_ConcordantColor

TLabelPosition m_LabelPos

CRgbaColor m_DiscordantColor

TModelUnit m_BarHeight

absolute size (in pixel)

File Description: configuration class for everything needed to render a single feature.

void SetColor(int idx, const CRgbaColor &color)

@ eLowIdentity

feature's default color based on feature type

CConfigurableItems - a static list of items that can be configured.

vector< string > GetStoragekeys(int subtype) const

Get hierarchy of keys above this subtype, starting with "Master" example, eSubtype_gene,...

CFeatureParams: the data structure holding feature rendering parameters.

EConnection m_Connections

TModelUnit m_LineWidth

absolute value (in pixel)

static int DecoStrToValue(const string &s)

TModelUnit m_HeadHeight

ratio to bar height

TModelUnit m_TailHeight

ratio to bar height

CRgbaColor m_NonConsensus

ELineStyle

how feature border and exons connections are drawn.

CRef< CCustomFeatureColor > m_CustomColors

custom color code for features with a special attribute.

TModelUnit m_OverviewFactor

ratio to bar height

EConnection

type of exon connection lines.

CGlTextureFont m_LabelFont

ELabelPosition m_LabelPos

EBoxStyle

how the box of the feature is drawn

TModelUnit m_BarHeight

absolute size (in pixel)

@ ePos_Side

always on 5' side

bool m_ShowStrandIndicator

EHeadStyle

strand indicator at the beginning.

CRegistryWriteView GetWriteView(const string &section)

get a read-write view at a particular level.

CRegistryReadView GetReadView(const string &section) const

get a read-only view at a particular level.

CHistParamsManager: class for manage histogram/graph settings for all feature subtype and various gra...

class CRegistryReadView provides a nested hierarchical view at a particular key.

int GetInt(const string &key, int default_val=0) const

access a named key at this level, with no recursion

double GetReal(const string &key, double default_val=0) const

bool GetBool(const string &key, bool default_val=false) const

list< SKeyInfo > TKeys

retrieve information about all keys in the registry

void GetTopKeys(TKeys &keys) const

Retrieve information about the top level keys in this view.

bool HasField(const string &key) const

Does a field with this section and key exist in this view?

string GetString(const string &key, const string &default_val=kEmptyStr) const

bool IsEmpty()

There is nothing in this view.

void Set(const string &key, int val)

access a named key at this level, with no recursion

bool DeleteField(const string &key)

delete the specified field (and any of its subfields) from this view and from its registry.

class CRgbaColor provides a simple abstraction for managing colors.

static string ComposeDecoKey(const string &base, const string &key)

static CRegistryReadView GetSizeReadView(const CGuiRegistry &reg, const string &base_key, const string &sect, const string &key, const string &def_sect="")

static const string & DefTrackProfile()

static void GetFont(const CRegistryReadView &view, const string &face_key, const string &size_key, CGlTextureFont &f)

static CRegistryReadView GetColorReadView(const CGuiRegistry &reg, const string &base_key, const string &sect, const string &key, const string &def_sect="")

Create a read view specifically for 'Color' section.

static CRegistryReadView GetReadView(const CGuiRegistry &reg, const string &base_key, const string &curr_key, const string &def_key1="", const string &def_key2="", const string &def_key3="")

read/readwrite view creation helper methods.

static CRegistryReadView GetLabelPosReadView(const CGuiRegistry &reg, const string &base_key, const string &sect, const string &key, const string &def_sect="")

static CRegistryWriteView GetWriteView(CGuiRegistry &reg, const string &base_key, const string &curr_key, const string &def_key1="", const string &def_key2="", const string &def_key3="")

static CRegistryWriteView GetColorRWView(CGuiRegistry &reg, const string &base_key, const string &sect, const string &key, const string &def_sect="")

static const string & DefGlobalSettingStyle()

static const string & DefColorTheme()

static const string & DefSizeLevel()

static const string & DefLayout()

static const string & GlobalSettingStyleKey()

static void SetColor(CRegistryWriteView &view, const string &key, const CRgbaColor &color)

static void GetColor(const CRegistryReadView &view, const string &key, CRgbaColor &color)

static const string & DefDecoStyle()

static const string & DefLabelPosition()

static const CFeatList * GetFeatList()

CRef< CGlTextureFont > m_TitleFont

void SetAnnotDepth(int depth)

string m_CurrLayout

layout style

static const string & ThemeKey()

CSeqGraphicConfig inline methods.

static const string & DefTheme()

bool m_ShowSimpleComments

CRgbaColor m_NonNCBITitleBackground

CRef< CClonePlacementParams > m_ClonePlacementSettings

cached clone placement settings.

CRgbaColor m_GridVertical

CRgbaColor m_SelHairlineOne

CConstRef< CFeatureParams > GetFeatParams(TFeatSubtype subtype) const

Get feature settings using a feature subtype.

void x_LoadHistSettings()

static void LoadSettingStyles(const CGuiRegistry &reg, string &theme, string &color, string &size, string &deco, string &profile, string &label)

Utility method helping initializing various settings styles.

void x_VerifySettings() const

CSeqGraphicConfig(bool cgi_mode=false, CGuiRegistry *registry=0, const string &theme="", const string &color="", const string &size="", const string &deco="", const string &profile="", const string &layout="", const string &label="")

void x_LoadFeatSettings()

bool m_ShowTrackMinusPlusSign

CRgbaColor m_SelHairlineMany

CRgbaColor m_SelHairlineDown

CRef< CGuiRegistry > m_Registry

bool m_ShowDownwardHairlines

CRef< CCategoryConfig > m_CategoryConfig

string m_CurrSize

size level

void x_SaveHistSettings()

CRgbaColor m_GridHorizontal

CRef< CGlTextureFont > m_CommentFont

string m_CurrGlobal

global setting style

CConstRef< CCommentConfig > GetCommentConfig() const

string m_CurrLabelPos

label position style

float m_ZoomFactor

Per pexel of a mouse movement.

string m_CurrTheme

current theme

int m_OverviewCutoff

cut-off between overview and detail mode(base per pixel)

CRgbaColor m_TitleBackground

CRgbaColor m_Background

Cached colors.

void InitCategoryConfig(const CCategoryConfig::TGroupMap &group_map, const CCategoryConfig::TSubgroupMap &sub_group_map)

if the category configuration is not loaded, load it

CRef< CCategoryConfig > GetCategoryConfig()

bool m_AutoHideTrack

Automatically hide tracks w/o data.

void x_SaveFeatSettings()

string m_CurrProfile

feature panel track profile

string m_CurrDeco

decoration, mainly for features

CRef< CCommentConfig > m_CommentConfig

string m_CurrColor

color theme

int m_HistogramCutoff

Num of features.

TFeatParams m_FeatSettings

cached histogram rendering parameters.

CRef< CGlTextureFont > m_LabelFont

cached fonts.

void LoadSettings()

update the cached settings.

int m_HairLineOption

Cached sizes.

CRef< CCustomFeatureColor > m_CustomFeatColors

int TFeatSubtype

we use int instead of CSeqFeatData::ESubtype for two reasons:

void SaveSettings(bool clear_themes=false)

bool m_CgiMode

not loaded from configure file

static CRef< objects::CCategory > CreateCategory(const string &name, const string &disp_name, const string &help, int order)

container_type::const_iterator const_iterator

const_iterator end() const

const_iterator find(const key_type &key) const

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

const string & GetMsg(void) const

Get message string.

void Warning(CExceptionArgs_Base &args)

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static const char label[]

void SetOrder(TOrder value)

Assign a value to Order data member.

const struct ncbi::grid::netcache::search::fields::SIZE size

const struct ncbi::grid::netcache::search::fields::KEY key

static const string kCommentConfigKey("GBPlugins.SeqGraphicCommentConfig")

static const string kBaseKey("GBPlugins.SeqGraphicView")

static const string kFeatParamsKey("GBPlugins.SeqGraphicFeats")

static const string kCPParamsKey("GBPlugins.SeqGraphicClonePlacement")

static const string kCustomColorKey("GBPlugins.CustomFeatureColors")

static const string kDefFeatKey("Master")

CRef< objects::CCategory > m_Category

void AddSubcategory(CRef< objects::CCategory > sub_cat)

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