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NCBI C++ ToolKit: src/objmgr/seqdesc_ci.cpp Source File

& (1<<(**m_Desc_CI).Which()) ?

:

;

( !ref_id )

;

: m_HaveTitle(

),

: m_HaveTitle(

),

: m_HaveTitle(

),

m_Depth(search_depth)

: m_Entry(entry, search_depth),

m_HaveTitle(

),

m_Depth(search_depth)

TDescChoices& choices,

: m_HaveTitle(

),

m_Depth(search_depth)

TDescChoices& choices,

: m_HaveTitle(

),

m_Depth(search_depth)

: m_Choice(iter.m_Choice),

m_Entry(iter.m_Entry),

m_Desc_CI(iter.m_Desc_CI),

m_HaveTitle(iter.m_HaveTitle),

m_Depth(iter.m_Depth)

(

!= &iter) {

User-defined methods of the data storage class.

User-defined methods of the data storage class.

ncbi::TMaskedQueryRegions mask

TDesc_CI x_GetFirstDesc(TDescTypeMask types) const

bool x_IsEndDesc(TDesc_CI iter) const

TDesc_CI x_GetNextDesc(TDesc_CI iter, TDescTypeMask types) const

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

const CSeq_id * GetId(void) const

Get the id of the location return NULL if has multiple ids or no id at all.

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

const TInst_Ext & GetInst_Ext(void) const

bool IsSetInst_Ext(void) const

void Reset(void)

Reset handle and make it not to point to any bioseq.

bool IsSetInst_Repr(void) const

TInst_Repr GetInst_Repr(void) const

CScope & GetScope(void) const

Get scope this handle belongs to.

const CBioseq_Base_Info & x_GetBaseInfo(void) const

const CSeqdesc & operator*(void) const

void x_SetChoices(const TDescChoices &choices)

void x_SetChoice(CSeqdesc::E_Choice choice)

void x_RemoveChoice(CSeqdesc::E_Choice choice)

bool x_RequestedType(void) const

CSeqdesc_CI & operator=(const CSeqdesc_CI &iter)

const CSeqdesc * operator->(void) const

void x_SetEntry(const CSeq_descr_CI &entry)

void x_CheckRef(const CBioseq_Handle &handle)

CSeq_entry_Handle GetSeq_entry_Handle(void) const

vector< CSeqdesc::E_Choice > TDescChoices

CSeqdesc_CI & operator++(void)

Move to the next object in iterated sequence.

CSeq_entry_Handle GetSeq_entry_Handle(void) const

bool x_ValidDesc(void) const

const CBioseq_Base_Info & x_GetBaseInfo(void) const

void x_AddChoice(CSeqdesc::E_Choice choice)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

bool IsRef(void) const

Check if variant Ref is selected.

E_Choice

Choice variants.

const TRef & GetRef(void) const

Get the variant data.

@ eRepr_ref

reference to another sequence

@ e_MaxChoice

== e_Modelev+1

@ e_Title

a title for this sequence

@ e_not_set

No variant selected.

@ e_Source

source of materials, includes Org-ref

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