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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/seqdbvolset_8hpp_source.html below:

NCBI C++ ToolKit: src/objtools/blast/seqdb_reader/seqdbvolset.hpp Source File

vector<string> & vol_names,

(rec_indx < (

)

.size()) {

(rvol.

() > oid)) {

(

index = 0; index < (

)

.size(); index++) {

((

[index].OIDStart() <= oid) &&

vol_oid = oid -

[index].OIDStart();

(rec_indx < (

)

.size()) {

(rvol.

() > oid)) {

(

index = 0; index < (

)

.size(); index++) {

((

[index].OIDStart() <= oid) &&

vol_oid = oid -

[index].OIDStart();

(

index = 0; index < (

)

.size(); index++) {

(

index = 0; index < (

)

.size(); index++) {

vol_total +=

[index].Vol()->GetVolumeLength();

(

index = 0; index < (

)

.size(); index++) {

(

index = 0; index < (

)

.size(); index++) {

(volname ==

[

].Vol()->GetVolName()) {

(volname ==

[

].Vol()->GetVolName()) {

const CSeqDBVol * Vol() const

Get a const pointer to the underlying volume object.

int OIDStart() const

Get the starting OID in this volume's range.

int m_OIDEnd

The end of the OID range.

int OIDEnd() const

Get the ending OID in this volume's range.

void Free()

Free the volume object.

CSeqDBVol * m_Vol

The underlying volume object.

CSeqDBVol * Vol()

Get a pointer to the underlying volume object.

int m_OIDStart

The start of the OID range.

void SetStartAndEnd(int start)

Set the OID range.

CSeqDBVolEntry(CSeqDBVol *new_vol)

Constructor.

void OptimizeGiLists()

Optimize the GI list configuration.

CSeqDBVolSet()

Default Constructor.

void UnLease()

Return storage held by the volumes.

const CSeqDBVol * GetVol(const string &volname) const

Find a volume by name.

~CSeqDBVolSet()

Destructor.

const CSeqDBVolEntry * GetVolEntry(int i) const

Find a volume entry by index.

void x_AddVolume(CSeqDBAtlas &atlas, const string &nm, char pn, CSeqDBGiList *user_list, CSeqDBNegativeList *neg_list, CSeqDBLockHold &locked)

Add a volume.

const CSeqDBVolEntry * x_FindVolName(const string &volname) const

Find a volume by name.

const CSeqDBVol * GetVol(int i) const

Find a volume by index.

int x_GetNumOIDs() const

Get the size of the entire OID range.

CSeqDBVol * FindVol(int oid, int &vol_oid)

Find a volume by OID.

Uint8 GetVolumeSetLength() const

Find total volume length for all volumes.

CSeqDBVolSet & operator=(const CSeqDBVolSet &)

Private operator to prevent assignment.

CSeqDBVol * GetVolNonConst(int i)

Find a volume by index.

int GetNumVols() const

Get the number of volumes.

CSeqDBVolSet(const CSeqDBVolSet &)

Private constructor to prevent copy operation.

CSeqDBVolEntry * x_FindVolName(const string &volname)

Find a volume by name.

CSeqDBVol * FindVol(int oid, int &vol_oid) const

Find a volume by OID.

int GetNumOIDs() const

Get the size of the OID range.

vector< CSeqDBVolEntry > m_VolList

The actual set of volumes.

volatile int m_RecentVol

The index of the most recently used volume.

const CSeqDBVol * FindVol(int oid, int &vol_oid, int &vol_idx) const

Find a volume by OID.

int GetVolOIDStart(int i) const

Get the first OID in a volume.

CSeqDBVol * GetVol(const string &volname)

Find a volume by name (non-const version).

int GetNumOIDs() const

Get the number of OIDs for this volume.

uint64_t Uint8

8-byte (64-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

unsigned int

A callback function used to compare two keys in a database.

Type and macro definitions from C toolkit that are not defined in C++ toolkit.

#define INT4_MAX

largest nubmer represented by signed int

Implementation for some assorted ID list filtering code.

Defines database volume access classes.

USING_SCOPE(objects)

Import definitions from the ncbi::objects namespace.

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