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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/seqdbfilter_8hpp_source.html below:

NCBI C++ ToolKit: src/objtools/blast/seqdb_reader/seqdbfilter.hpp Source File

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vector< CRef<CSeqDB_AliasMask> >

;

vector< CRef<CSeqDB_FilterTree> > &

()

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cout << tab1 <<

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cout << tab1 <<

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cout << tab2 <<

<< (**iter).ToString() <<

;

cout << tab2 <<

<< vol_iter->GetBasePathS() <<

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cout << tab1 <<

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void SetFrame(const string &frame)

void Log(const string &name, const char *value, CDebugDumpFormatter::EValueType type=CDebugDumpFormatter::eValue, const string &comment=kEmptyStr)

Something else yet again etc.

int m_End

OID after last included OID.

int GetEnd() const

Get OID after last included OID.

CSeqDB_Path m_Path

Path of file describing included IDs.

CSeqDB_AliasMask(EMaskType mask_type, const CSeqDB_Path &fn, int OidMaskType=0)

Constructor for file-based filtering.

int m_Begin

First included OID.

void DebugDump(CDebugDumpContext ddc, unsigned int depth) const

Define method for dumping debug information.

CSeqDB_AliasMask(int mem_bit)

Constructor for MEMBIT filter.

EMaskType

Various types of masking.

@ eTaxIdList

Taxonomay Id List.

@ eOidRange

OID Range [start, end).

string ToString() const

Build string describing the filtering action.

EMaskType m_MaskType

Type of filtering to apply.

int GetBegin() const

Get first included OID.

EMaskType GetType() const

Get type of filtering applied.

CSeqDB_Path GetPath() const

Get path of file-based filter.

int m_MemBit

Membit to filter.

CSeqDB_AliasMask(int begin, int end)

Constructor for OID range filter.

int m_OidMaskType

Oid Mask Type.

int GetOidMaskType() const

int GetMemBit() const

Get Membit.

Tree of nodes describing filtering of database sequences.

void AddVolume(const CSeqDB_BasePath &vol)

Attach a volume to this node.

CSeqDB_FilterTree()

Construct.

TFilters m_Filters

List of sequence inclusion filters.

void AddNodes(const vector< CRef< CSeqDB_FilterTree > > &nodes)

Add several child nodes to this node.

void x_Print(int indent) const

"Pretty-print" this tree in symbolic form.

bool HasFilter() const

Check whether this tree represents any volume filtering.

void SetName(string name)

Set the node name.

string m_Name

The node name.

const vector< CRef< CSeqDB_FilterTree > > & GetNodes() const

Get child nodes attached to this node.

vector< CRef< CSeqDB_AliasMask > > TFilters

Type used to store lists of filters found here.

void Print() const

Print a formatted description of this tree.

void AddFilters(const TFilters &filters)

Add filters to this node.

vector< CSeqDB_BasePath > m_Volumes

Database volumes attached at this level.

vector< CRef< CSeqDB_FilterTree > > m_SubNodes

Other nodes included by this node.

CSeqDB_FilterTree(CSeqDB_FilterTree &other)

Prevent copy-construction of this object.

CSeqDB_FilterTree & operator=(CSeqDB_FilterTree &other)

Prevent assignment of this class.

const TFilters & GetFilters() const

Get filters from this node.

void AddVolumes(const vector< CSeqDB_BasePath > &vols)

Attach several volumes to this node.

const vector< CSeqDB_BasePath > & GetVolumes() const

Get volumes attached to this node.

CRef< CSeqDB_FilterTree > Specialize(string volname) const

Specialized this tree for the indicated volume.

void AddNode(CRef< CSeqDB_FilterTree > node)

Add a child node to this node.

const string & GetPathS() const

Get the path as a string.

static unsigned char depth[2 *(256+1+29)+1]

static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

virtual void DebugDump(CDebugDumpContext ddc, unsigned int depth) const

Define method for dumping debug information.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

USING_SCOPE(objects)

Import definitions from the ncbi::objects namespace.

Defines database volume access classes.

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