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NCBI C++ ToolKit: src/objtools/blast/seqdb_reader/seqdbbitset.hpp Source File

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index);

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ESpecialCase

Special edge cases (all-set and all-clear).

@ eAllSet

All OIDs are set.

@ eAllClear

All OIDs are clear.

void AssignBit(size_t i, bool value)

Store a value at the given index.

void x_Alloc(size_t bits)

Allocate memory for the bit data.

unsigned char TByte

Word size for vector elements.

ESpecialCase m_Special

Special edge cases.

void IntersectWith(CSeqDB_BitSet &other, bool consume)

This bitset is assigned to the intersection of it and another.

CSeqDB_BitSet & operator=(const CSeqDB_BitSet &)

Prevent copy assignment.

void Swap(CSeqDB_BitSet &other)

Swap two bitsets.

void DebugDump(CDebugDumpContext ddc, unsigned int depth) const

Allows to dump a snapshot of the object.

bool GetBit(size_t index) const

Get the value of the specified bit.

void UnionWith(CSeqDB_BitSet &other, bool consume)

This bitset is assigned to the union of it and another.

void Normalize()

If this is a special case bitset, convert it to a normal one.

void ClearBit(size_t index)

Clear the specified bit (to false).

bool CheckOrFindBit(size_t &index) const

Check if a bit is true or find the next bit that is.

void x_CopyBits(const CSeqDB_BitSet &src)

Set all bits that are true in `src'.

CSeqDB_BitSet(const CSeqDB_BitSet &)

Prevent copy construction.

vector< TByte > m_Bits

Representation of bit data.

void AssignBitRange(size_t start, size_t end, bool value)

Store the provided value in a range of bits.

@ eWordShift

Shift to convert from bit index to vector index.

@ eWordBits

Number of bits per stored word.

@ eWordMask

Mask to compute bit index within word.

void x_Copy(CSeqDB_BitSet &other, bool consume)

Set this bitset to the value of the provided one.

void x_Normalize(size_t start, size_t end)

Replace `special' with normal bitsets, adjust the index range.

CSeqDB_BitSet(size_t start, size_t end, ESpecialCase sp=eNone)

Constructor for bit array with start/end range.

CSeqDB_BitSet()

Default constructor for zero-length empty bit array.

size_t m_Start

Number of bits stored here.

size_t m_End

Number of bits stored here.

void SetBit(size_t index)

Set the specified bit (to true).

static unsigned char depth[2 *(256+1+29)+1]

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

const GenericPointer< typename T::ValueType > T2 value

USING_SCOPE(objects)

Import definitions from the ncbi::objects namespace.

Defines database volume access classes.

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