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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/seqdbbitset_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/blast/seqdb_reader/seqdbbitset.cpp Source File

bytes =

.size();

(

(p2-p1) < bytes) {

memcpy(&

[0], p1, bytes);

nwords =

.size();

(vx < nwords && !

[vx]) {

(ix < bitcount) {

.x_Copy(other, consume);

range.

(*

,

);

range.

(other, consume);

end1 = (

.size() /

(

)) *

(

);

end2 =

.size();

(

!= end2 && (

& (

(

)-1))) {

* dst = &

[

];

* src = & other.

[

];

* dst = (

*)(&

[

]);

* src = (

*)(& other.

[

]);

* dst = &

[

];

* src = & other.

[

];

(

= start;

< end;

++) {

ddc.

(

,

.size());

ncbi::TMaskedQueryRegions mask

void SetFrame(const string &frame)

void Log(const string &name, const char *value, CDebugDumpFormatter::EValueType type=CDebugDumpFormatter::eValue, const string &comment=kEmptyStr)

@ eAllSet

All OIDs are set.

@ eAllClear

All OIDs are clear.

void AssignBit(size_t i, bool value)

Store a value at the given index.

void x_Alloc(size_t bits)

Allocate memory for the bit data.

unsigned char TByte

Word size for vector elements.

ESpecialCase m_Special

Special edge cases.

void IntersectWith(CSeqDB_BitSet &other, bool consume)

This bitset is assigned to the intersection of it and another.

void Swap(CSeqDB_BitSet &other)

Swap two bitsets.

void DebugDump(CDebugDumpContext ddc, unsigned int depth) const

Allows to dump a snapshot of the object.

bool GetBit(size_t index) const

Get the value of the specified bit.

void UnionWith(CSeqDB_BitSet &other, bool consume)

This bitset is assigned to the union of it and another.

void Normalize()

If this is a special case bitset, convert it to a normal one.

void ClearBit(size_t index)

Clear the specified bit (to false).

bool CheckOrFindBit(size_t &index) const

Check if a bit is true or find the next bit that is.

void x_CopyBits(const CSeqDB_BitSet &src)

Set all bits that are true in `src'.

vector< TByte > m_Bits

Representation of bit data.

void AssignBitRange(size_t start, size_t end, bool value)

Store the provided value in a range of bits.

@ eWordShift

Shift to convert from bit index to vector index.

@ eWordBits

Number of bits per stored word.

@ eWordMask

Mask to compute bit index within word.

void x_Copy(CSeqDB_BitSet &other, bool consume)

Set this bitset to the value of the provided one.

void x_Normalize(size_t start, size_t end)

Replace `special' with normal bitsets, adjust the index range.

CSeqDB_BitSet()

Default constructor for zero-length empty bit array.

size_t m_Start

Number of bits stored here.

size_t m_End

Number of bits stored here.

void SetBit(size_t index)

Set the specified bit (to true).

static unsigned char depth[2 *(256+1+29)+1]

void swap(NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair1, NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair2)

virtual void DebugDump(CDebugDumpContext ddc, unsigned int depth) const

Define method for dumping debug information.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

unsigned int

A callback function used to compare two keys in a database.

const GenericPointer< typename T::ValueType > T2 value

Implementation for the CSeqDB_BitSet class, a bit vector.

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